Komagataella phaffii: PAS_chr3_0992
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Entry
PAS_chr3_0992 CDS
T01092
Name
(RefSeq) Protein involved in pre-mRNA splicing
KO
K12830
splicing factor 3B subunit 3
Organism
ppa
Komagataella phaffii
Pathway
ppa03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ppa00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
PAS_chr3_0992
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ppa03021
]
PAS_chr3_0992
03041 Spliceosome [BR:
ppa03041
]
PAS_chr3_0992
03036 Chromosome and associated proteins [BR:
ppa03036
]
PAS_chr3_0992
Transcription machinery [BR:
ppa03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
PAS_chr3_0992
Spliceosome [BR:
ppa03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
PAS_chr3_0992
Complex B
PAS_chr3_0992
Complex C
U2 SnRNP specific factors
PAS_chr3_0992
Chromosome and associated proteins [BR:
ppa03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
PAS_chr3_0992
TFTC complex
PAS_chr3_0992
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_RSE1_2nd
Beta-prop_RSE1_1st
CPSF_A
Motif
Other DBs
NCBI-GeneID:
8199737
NCBI-ProteinID:
XP_002493233
UniProt:
C4R668
LinkDB
All DBs
Position
3:1915868..1919407
Genome browser
AA seq
1179 aa
AA seq
DB search
MNSNQPELVLYHLSLKRPSASVKSVIGSFTGHKSKQELIVALHSSLIVYSLDTETGQLHK
EREHELFCIVQNIAKFRIPGSIQHCLIITSDSGNITLTRLNEKIEFESLVNHPLTKTGLR
RLNPSCYIAVDPKNRSFMLCALEKNKMITVLNRNSEDNTIKISSPLEANISKVVTFYTCA
LDVGYDNPLTATIECNYDSPTKKYLSYYELDLGLNHVVKKYTEEIPFKSNFLISIPRDAE
GPSGLLLCSQGIIQFKFLNKRTHCLPIPKRKNQKELSYIINGECHKMKNSFFFLLQSDLG
DIFKVSVTYQEVQDDTYDTKEVSSIEIKYFDSLPVCLDLHIFKSGFLFADTETGDKYLYQ
FEKLGDDDDGTIWSSENYPDEESVYEDHHIYFDTKELDNLSLVYILDCLNPITDGLLDQE
KSQLVLTSGGSSRSSLKLLKHELAINELASSELPGSALNIFTTKVSHKDQYDKYMVISFI
DGTLVLSIGESVDEVSDSGLELQVSTIAVQQVGRNSLAQVHSHGIVHLKGLNEPSFEKSL
WQPPVGAEILVASMTNSQIALGLSNRELVYFEIDEYDQLIEHKERKEMSGRISALSLGQI
PDGRLRSPFLAVGCNDMTIKILSTDPNSCLEVLSLQALSSIPSDLQITNLEQGAGYFVHI
GLDSGIYIRTLLNRISGQLSDTRVNYLGPKRVSLSPVKIFGKNLVLAFSDTSYLSYNSGF
DAKITPLCDGKFTYGCGFISEECPENGVVGVSAENLTIFTIDQLDTDMNVKDIPLTFTPR
RITLVSEDVVVVTESQHYTKNPYLNSVATEESRELYQQIGYEKSSHWSSVIETVDIQSQQ
VIQAINLDKELAIFGSTKVSFASHPDEVYFIVSCSVEQELLPNINKGTQLRTYKITEEGL
QFLHSTETDQLVYSLTEFQGKLLAGVGNLLVLYDLGLKKLLKKSLTQTSFHQITSIDYQG
FRIVISDMKQSSMFLSFNAEENRFISLCDDITQRHITCSKMLDYSTVVTGDRFGTISVLR
CPEKVNKDHLDYIEAKSKMIGECPFKLKQLASYYVQDVVTSLSRGSLTVGGKQSIIYTGL
QGTIGILSPIQTPSDIDFFVSLEDSLRQELLKSKHLLTGRSHLKYRGYYVPAQGVVDGDL
IQYFYQLPDSTKQFISTKLDRSTLEIERKISIMRSLVAL
NT seq
3540 nt
NT seq
+upstream
nt +downstream
nt
atgaactctaaccagccagagctggttttgtaccacttgtctctgaaaagaccgtctgca
agtgtcaaatctgtaattggaagttttactgggcataaaagcaaacaggagctcattgtt
gccctccactcttcattaattgtctatagtttggatacagaaacgggacaactgcataaa
gagcgtgaacacgagctgttctgcattgtgcagaatattgcaaagtttagaatacccgga
tccatacagcattgccttataataacctcagatagtggaaatatcacgctgacaagattg
aacgagaagatcgaatttgagagcttggtcaaccatccgctgactaagactggattgaga
aggctaaatccatcctgctacattgcagtggatccaaagaatagaagttttatgctctgt
gccttggagaaaaacaaaatgataacggttctcaataggaactcggaagataacaccatt
aaaatatcgtcaccattggaggccaatattagcaaggttgtaaccttttatacgtgtgca
ttggatgtgggttacgacaatcctttaaccgctacaatagaatgcaactatgattctccc
acgaagaaatacctctcgtactatgaattagatctgggattgaaccatgttgtgaaaaaa
tacactgaggaaattcctttcaagagcaatttcttgatttcaattccccgagatgcagaa
ggcccgtctggactgctcctttgctctcaaggtatcatccagttcaagtttctcaacaaa
aggactcactgtttgcccattcctaagcgaaaaaaccagaaagagctcagttacataata
aatggagaatgccacaagatgaaaaattcattcttcttcttgcttcaaagtgatctagga
gacatctttaaggtttctgttacatatcaagaggtccaagacgatacctatgacacgaaa
gaagtgagtagtattgaaatcaaatactttgattctctccccgtgtgtttggacctgcat
attttcaaatctgggtttctgtttgcagacactgaaactggagataagtatttgtatcag
tttgaaaagctgggtgacgacgatgatggtaccatttggagttcagaaaactatccggac
gaggaatccgtctatgaggatcaccatatttactttgacaccaaggagttagataattta
tctctggtgtatatactagattgcctgaatccaatcactgatggcttactagaccaagaa
aagtctcagttggtgttgacatctggtggcagcagtcggagctcgttgaagctactaaaa
cacgaactagccatcaacgaactagcatcttctgaattaccgggaagtgccctcaatatt
tttactactaaagtttcgcacaaagatcaatacgacaaatacatggttattagctttatt
gatgggacactggtactcagtatcggggaatctgttgatgaggtgtctgattcagggtta
gagcttcaggtatctacaatcgctgtgcagcaggttggaagaaattcattagcccaggtt
cattcacatggaatagtgcatttaaagggtttgaacgaaccaagttttgaaaaaagttta
tggcaaccacctgtaggggctgagattcttgttgcttcgatgacaaattcgcagatagct
cttggtctgagtaacagagaattggtatacttcgaaattgacgaatatgatcagctgatc
gaacacaaagaaaggaaagaaatgtcaggtaggatttcagcgctttctctgggccaaatt
ccagatggtcgactgagatccccttttttagcggtgggttgcaacgacatgaccatcaaa
atactcagcacggatcctaattcctgtctagaggtgctctccttgcaagctctatcttca
atcccttctgatcttcaaatcacaaaccttgaacaaggtgctggatattttgttcacata
ggactggacagcggtatttatattcgaactcttctcaaccgtatatcagggcagttgagt
gatacaagagtaaattatcttggaccaaaacgagtgtctttatctccagttaaaatattt
ggaaagaacttggttcttgctttctcggatacctcatatctcagttataattccgggttt
gatgccaagataacacctttatgtgacggaaagtttacctatggctgtggttttattagt
gaggagtgtcctgaaaatggagttgtcggagtatctgcagaaaaccttacgattttcaca
attgatcaacttgataccgatatgaacgttaaagatattccattaacttttacacctaga
aggatcaccctcgtttcagaggatgtagtagttgttacagagtcccagcattacactaag
aatccatatttgaactccgttgccacagaagaatcacgagaactgtatcaacagataggt
tacgaaaagtcttctcattggagctctgtgattgagacagttgatattcagagccagcaa
gtaatccaagctataaatctggataaggaattggctatttttggaagcactaaagtcagt
tttgcgtctcacccagatgaggtgtacttcatcgtgtcatgctctgttgagcaagagtta
cttcccaacatcaacaaaggaacgcaactaaggacatacaagattacagaagagggccta
caatttctgcacagcacagaaacggaccaactagtttattctttaacggaatttcaaggg
aagctattggcgggagtaggaaaccttctggttttgtatgatctgggattgaaaaaattg
ctcaagaaatcccttacccaaaccagttttcatcaaataactagcattgattatcaggga
tttagaattgtcatttcagacatgaaacaatcttcaatgtttctatcctttaatgctgaa
gaaaaccgttttatttccctatgtgacgatattactcaaagacacattacctgctccaaa
atgttggactattctaccgtagtcactggtgaccgatttggaactatttccgtattgaga
tgccctgaaaaggtcaataaagatcatcttgattacattgaagcaaaatccaaaatgata
ggagaatgcccgtttaaactgaagcaattagcaagttactacgttcaagatgtggttaca
agtttatccagaggcagtttaactgtaggtgggaaacagtctattatctacacaggccta
cagggtacaatcggtatcttgtctccaattcagacaccttcagatatagactttttcgtc
tctttggaggactctctacggcaagaactgttgaaatccaagcaccttctaacaggaaga
agccacttgaaatatcgaggttactatgttccagctcagggtgtggtggatggtgatcta
atacaatatttctaccaattgccagactcaacgaaacagttcatttctaccaaacttgac
aggagcacactggagattgagagaaagatctccataatgagatctttggtcgccctttaa
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