Komagataella phaffii: PAS_chr4_0140
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Entry
PAS_chr4_0140 CDS
T01092
Name
(RefSeq) ATP-dependent DEAD (Asp-Glu-Ala-Asp)-box RNA helicase
KO
K11594
ATP-dependent RNA helicase DDX3X [EC:
5.6.2.7
]
Organism
ppa
Komagataella phaffii
Brite
KEGG Orthology (KO) [BR:
ppa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppa03019
]
PAS_chr4_0140
03041 Spliceosome [BR:
ppa03041
]
PAS_chr4_0140
03036 Chromosome and associated proteins [BR:
ppa03036
]
PAS_chr4_0140
Enzymes [BR:
ppa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PAS_chr4_0140
Messenger RNA biogenesis [BR:
ppa03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
PAS_chr4_0140
mRNA cycle factors
Common to processing body (P body) and stress granule
PAS_chr4_0140
Spliceosome [BR:
ppa03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
PAS_chr4_0140
Chromosome and associated proteins [BR:
ppa03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
PAS_chr4_0140
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Motif
Other DBs
NCBI-GeneID:
8201051
NCBI-ProteinID:
XP_002493545
UniProt:
C4R6Z1
LinkDB
All DBs
Position
4:complement(276239..278059)
Genome browser
AA seq
606 aa
AA seq
DB search
MSELEDSMNNLNVNEGGRQSKSNYVPPHRRNGQGSSAFANNGSRGGGFGGRGRDNFSAGR
GGGRNGMNFRGGRGRGPTRGQGRWVQGKHVPAPKDEELELKMFGTPEDPSFQSSGLNFDN
YDDIPVEATGEDVPEPITQFTSPPLDELLLENIKLSRFTKPTPVQKYSVPIVSNHRDLMA
CAQTGSGKTGGFLFPVLSECFQTGPAPIEVESETVFRKHRAYPTILVMAPTRELVSQIYD
EAKKFAYRSWMRPCVVYGGANIRDQMEDLILGCDLLVATPGRLSDLLERGKISLAKIKYL
ILDEADRMLDMGFEPQIRHIVQGCDMPSVNERHTLMFSATFPRDIQLLAKDFLKDYIFLS
VGRVGSTSENITQRVLSVEDDEKKSVLLDILSSSDDIKEGLTLIFVETKRMADTLSHFLV
TRNFPATSIHGDRTQQEREHALHLFKSGAAPILVATAVAARGLDIPNVTHVVNYDLPADI
DDYVHRIGRTGRAGNVGIATAFVNRGNKNLIKGLIELLTEANQEVPQFLSALSREATMGR
GGARGGRGGRNAYGKDFRRSSNYPPQPSSQTYGRANGGSGYFGGSNFYGSAPSSNTTQQS
SGSDWW
NT seq
1821 nt
NT seq
+upstream
nt +downstream
nt
atgtctgaattagaagattcaatgaacaacttaaatgttaacgaaggtggccgtcagtcc
aagagcaactacgtcccaccacacagaagaaacggtcaagggtcctcggcttttgcaaac
aatggatcccgtggtggcggtttcggtggcagaggaagagataacttctctgctggccgt
ggcggcggcagaaacgggatgaacttcagaggcggcagaggaagagggcccacaagaggc
caaggccgttgggttcaaggtaaacacgtccctgctccaaaagacgaagaactggaatta
aagatgtttggaactccagaggatccatccttccagtcgtccggtttgaactttgacaac
tacgacgatatcccagtcgaagccaccggtgaagacgtccctgaaccaatcacccaattc
accagccctcctttggacgagctgttattggaaaacattaaactttccaggtttactaag
cctactccagtgcaaaaatactccgtcccaatcgtttctaatcacagagatcttatggct
tgtgcccagaccggttccggtaagactggtggattcttattccccgttttatctgagtgt
ttccaaacaggcccagcacctatcgaagtcgagtcggagaccgttttccgcaagcacaga
gcctatccaactattttagtcatggctccaacaagagagctggtctcccagatctacgat
gaggctaagaagtttgcctacagatcatggatgagaccttgcgtagtatatggtggtgct
aacatccgtgaccaaatggaagacttaatcctcggttgtgatcttttggtcgccactcct
ggtagattgagtgatcttttagaacgtggaaagatatcgcttgctaagattaaatacctc
attttggatgaggctgacagaatgttggatatgggtttcgaaccacagattagacacatt
gtccaaggttgtgatatgccttctgtcaatgagagacacaccctcatgttctctgctact
ttccctagagatattcagttattggccaaggacttcctgaaggactacattttcctttca
gtcggtcgtgttggttccacatccgagaacattacacaaagagttctttctgtcgaagac
gacgaaaagaaatccgtcttgctggacattttgtcctcttcagacgacataaaggaaggt
ctgacccttatctttgttgaaacaaagagaatggcagacactttgtcccacttcttagtc
acaagaaacttccctgccacctccattcatggtgacagaacacaacaagagagagagcat
gctcttcacttatttaaatctggtgctgctccaattttggttgccactgcagttgccgcc
agaggtttagacattccaaatgtcacacacgttgtcaactacgatctaccagctgacatt
gacgattacgtccatcgtattggtcgtaccggtcgtgctggtaatgttggtattgccact
gcattcgttaaccgcggtaacaagaacctgatcaagggtttaattgaactgttaaccgag
gctaaccaagaagttcctcaattcctgagcgccctttccagagaagctactatgggtaga
ggcggagccagaggtggaagaggcggaagaaacgcttacggaaaagatttcagaagatct
tctaactacccgcctcagccaagttcccaaacttatggtagggctaatggaggaagtggt
tacttcggtggttctaacttctacggtagtgctccaagcagcaacactactcaacaatcg
tctggttctgattggtggtaa
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