Komagataella phaffii: PAS_chr4_0231
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Entry
PAS_chr4_0231 CDS
T01092
Name
(RefSeq) Putative nucleolar DEAD box RNA helicase
KO
K14776
ATP-dependent RNA helicase DDX10/DBP4 [EC:
5.6.2.7
]
Organism
ppa
Komagataella phaffii
Brite
KEGG Orthology (KO) [BR:
ppa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
ppa03009
]
PAS_chr4_0231
Enzymes [BR:
ppa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PAS_chr4_0231
Ribosome biogenesis [BR:
ppa03009
]
Eukaryotic type
90S particles
Helicases
PAS_chr4_0231
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CTE_SPB4
NusG_II
DUF5716_C
Motif
Other DBs
NCBI-GeneID:
8200902
NCBI-ProteinID:
XP_002493641
UniProt:
C4R787
LinkDB
All DBs
Position
4:467913..470213
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AA seq
766 aa
AA seq
DB search
MARNQKISTQERRNLREKHQQAQKDRQEKLAQLDPKEYTKFTKFSELPLSRQTLIGLRGA
HFIEMTGIQKEAIPPALQGQDILGAAKTGSGKTLAFLIPLIEMLLREDWNEFDGVGALII
SPTRELAMQIYEVLLNIGKHSSFSCGLVIGGKDFKYESERIGKINVLIGTPGRLLQHMDQ
SANLNINNLQMLILDEADRILDMGFKKTLDSIISSIPPQRQTLLFSATQTKSVQDLARLS
LTNPKYINSSSDLDLATPDSLEQSYIVVPLNEKINTLWSFIKTHLKSKILVFLSSSKQVH
FLYEAFRKLQPGISLMKLHGRQKQTARIETTVKFSHAQHCCLFATDVVARGLDFPAIDWV
VQLDCPEDASTYIHRVGRCARAGKEGKSLLILTPSEEEAFVRRLEAKNIKNISKLNVRGA
KKKTIEPQMQALCFKSPELKYLGQKAFIAYFKSVFIQKDKEVFQVQKLPVEEYAKSLGLP
GAPKIKLLEKSAKAMTEEQLSKLKERKNASRQLLTLSKLDENGEEKPEDKKKVRTKYDKM
FERQNQNVLSEHYRNLNAEQDDEEEDFISVKRTDHDLTENVPELDNLPTSKRAAKKALSK
KAMSKAGANPKKLVFDDDGKAHEIYELAGEEEFHEQGDALDQKTKFIQQESTVMAEADSE
DKVVAKEKKVEKKRRRQDIERKAKEESDLSEEDDEEDEDEEELPDIARDYDSDSSGDDEP
DRKKTKKWFENDRGINGTDFNTKVIELEKPDTIDDMEALAEQLLHG
NT seq
2301 nt
NT seq
+upstream
nt +downstream
nt
atggcaaggaatcaaaaaatctcaacacaagaacgaagaaacttgcgtgagaagcatcag
caagctcaaaaagaccgtcaagagaagcttgcccagcttgatccgaaagaatacaccaaa
tttacaaagttttctgagcttcctctatccagacaaacgctaataggattaagaggagcc
cacttcatagaaatgacagggatacagaaagaagctattccaccagctctccaagggcaa
gatattttaggagctgccaaaacgggatcaggcaaaaccttggccttcttgattcccctg
atagaaatgttactgagagaagattggaatgaatttgatggtgtcggagcactaattata
tctcccactagagagttggctatgcagatctatgaagttctcctaaatattggtaagcat
agcagtttttcatgtggtctagtcatagggggcaaagacttcaagtatgagtccgaaaga
atcggaaagattaatgtactcattggaacaccagggagattattgcagcatatggaccaa
tcagccaatttgaatatcaacaacttacaaatgctaattttggatgaagctgatagaatc
ctagacatgggtttcaagaaaaccctggatagcatcatttccagcattcctccgcaaaga
caaacgttattgttttcggccacccaaacaaaatcggtccaagatttggcccgtttatcg
ttaactaacccgaaatacataaacagttcctcggatcttgatctggcaactccagattcc
ttggagcagtcctatatcgttgttcccctcaatgaaaaaataaacacattatggtcattc
atcaaaactcacctcaaatcgaaaattttggtcttcttatcatcttccaaacaagtgcat
ttcctctatgaggcattcaggaaattgcaaccgggtatatctttgatgaagttgcacggc
agacagaagcaaacggcaagaatcgaaaccacagtcaaattttctcacgcacaacattgt
tgtctgtttgcaacggatgtggttgcccggggtttagatttcccagccattgactgggtt
gtgcaacttgactgcccggaggatgcttcaacatatattcacagggttggtagatgtgcc
agagctggaaaagaggggaaatcattgttaatactaactccttctgaggaagaagctttt
gtgcggagactggaagctaaaaacatcaaaaatatctccaaattgaatgtaagaggtgca
aagaaaaagacgattgagcctcaaatgcaagcgttatgtttcaaatctccagaattaaag
tacttgggccagaaagcttttattgcttatttcaaatcagtttttatacaaaaagacaaa
gaagtatttcaagttcaaaagttgccggttgaagagtatgccaaatctcttggacttcca
ggtgctccgaagatcaaactgctggagaagtccgccaaagccatgactgaggagcaacta
tccaagttaaaagaacgaaagaacgcatccaggcaattacttaccctctcaaaacttgat
gagaatggagaagaaaaacctgaagacaagaagaaggttagaacaaaatatgataaaatg
tttgaaagacagaatcaaaatgtgctttcggagcactatagaaatttgaatgcagaacag
gatgatgaggaagaagactttatctctgtcaaaaggaccgatcacgacttgacagagaac
gtccctgaacttgacaaccttccaacttctaagagggctgctaaaaaggctttgtctaaa
aaggctatgtcaaaggctggtgccaaccccaagaaattggtgtttgatgacgacggtaaa
gcgcatgaaatatacgagctagcaggagaggaagagttccatgaacaaggtgatgcgctg
gatcaaaagaccaagtttattcagcaagagtccacagttatggctgaagctgactctgaa
gataaggtggttgcaaaggagaaaaaagtcgaaaaaaagagaagaagacaagacattgaa
cgaaaagccaaagaagagtctgatctgtctgaggaagatgatgaagaagacgaagatgaa
gaagaacttccagacattgctagggactatgacagcgacagtagtggggacgatgagcca
gaccgtaagaagactaaaaaatggttcgagaatgacagaggcatcaatggaactgatttt
aacactaaggtgattgagttggagaagcctgatactattgatgacatggaagctttggct
gaacaattgcttcatggataa
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