Komagataella phaffii: PAS_chr4_0238
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Entry
PAS_chr4_0238 CDS
T01092
Name
(RefSeq) Subunit of TFIIH and nucleotide excision repair factor 3 complexes
KO
K03144
transcription initiation factor TFIIH subunit 4
Organism
ppa
Komagataella phaffii
Pathway
ppa03022
Basal transcription factors
ppa03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ppa00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
PAS_chr4_0238
09124 Replication and repair
03420 Nucleotide excision repair
PAS_chr4_0238
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ppa03021
]
PAS_chr4_0238
03400 DNA repair and recombination proteins [BR:
ppa03400
]
PAS_chr4_0238
Transcription machinery [BR:
ppa03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
PAS_chr4_0238
DNA repair and recombination proteins [BR:
ppa03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
PAS_chr4_0238
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Tfb2
Tfb2_C
Helicase_C_3
Motif
Other DBs
NCBI-GeneID:
8200907
NCBI-ProteinID:
XP_002493646
UniProt:
C4R792
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Position
4:complement(480926..482569)
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AA seq
547 aa
AA seq
DB search
MSDSSNLLKTTVNDYLENLPESVHNKLYQSSITCLAIFRLLPSLAKFYVMSLLFNEHSVS
YIDLTRWIRPDNMTHLVSSSTKSSSSSAVTNFPGAIGKNKMYQNECLKRLKQLNLIKDVR
KQWTNPNTGQLTNVVVLQLNPMFRKNFRNALTGSQMSNDLNNDIEMTDVEEVSEEFLDRY
SLMKWENILHFMVGSEVPELPSIGVLSLLRHSGLMDIGEENEFIATPKRFKGDNMDLKSM
KITQDGFQFLLQDINAQIWQLLLQYLRMSEKLMMNPVDVLNFIFMLGSLELGKQYPVTLL
SDTQVIMLEDLVDYGLIYYPEKNRYFYPTRMATTLTSEKTTFKTASMSMNQVLEGGPEVK
DHGSIVLETNFKLYCYTTSPLQIAILNLFVHLRTRFANMVTGMITRESVREALRNGITAD
QIIKYLETHAHSQMKKLAEEKLLKKLEFDSNATETQQIGSQVKLEVIPPTVVDQIKLWQL
EMDRLQTFAGFLFKDFANAQEFEQLANYADEVGVMLWRDDDKRKFFVTEEGIGQLNDYAN
RLKRHRA
NT seq
1644 nt
NT seq
+upstream
nt +downstream
nt
atgagtgattcttccaacctgttgaagaccactgttaacgactatttggagaaccttcct
gaatctgtgcacaacaaattgtaccaatcttcaatcacatgtttagctattttcagatta
ttgccctcactagctaaattctacgtcatgagtcttctattcaatgagcattctgtttct
tacattgacttgacaagatggatacgtccagataacatgacgcacttggtttcgtcctct
acaaagtcgtcttcgtcgtccgcagtcactaattttccaggagcaatcggaaagaataag
atgtaccaaaacgaatgtctgaaaaggttgaaacagctaaacctgatcaaggatgtcaga
aaacagtggactaatcctaatacagggcagttgacaaacgttgttgtacttcaattgaac
ccaatgtttcgtaagaattttcgtaatgctctcacaggatcccaaatgagtaatgatctc
aataatgatatcgagatgacagatgtggaggaagtttcggaggagttcctggatcggtac
tctttaatgaagtgggaaaatatcttacatttcatggtaggctcagaggtgcctgaattg
ccctcaatcggcgttctctcgttattgaggcatagtgggttgatggatattggcgaagag
aacgagtttatagccacacctaaacgtttcaaaggagataatatggatttgaaatccatg
aaaattacgcaggacgggtttcagtttttgttacaagatatcaatgcccagatatggcaa
cttctgctacagtatcttcggatgagtgaaaaattaatgatgaatccagtcgatgtgttg
aattttatcttcatgctgggttctctggaactaggaaaacagtaccctgttactctcttg
agtgacacccaagtgataatgctggaggatttggttgattatggattaatttattatcca
gagaaaaatagatacttctacccaacccgaatggcaacgacattgacatcagaaaaaaca
acattcaaaactgcatcgatgtcaatgaatcaagtgctggaagggggaccggaggtaaaa
gaccacggatctatagtgctggaaactaatttcaaactatactgttacaccacttctccc
ctacagattgctatcctgaatctgtttgttcatttgagaacaagattcgcaaatatggtt
acgggaatgatcacaagagaatctgtaagagaggctctacgtaatggaataactgctgac
caaataataaagtatttggaaacacatgcccattcacaaatgaagaaactcgcagaagaa
aaattacttaaaaagttagagttcgattcgaacgccacggaaactcaacaaatcgggtcg
caagtcaagttagaggtaattcctccaactgtagtagaccagatcaagctttggcagttg
gaaatggatcgacttcaaacttttgccggttttcttttcaaagattttgccaatgcccaa
gaatttgagcaattggctaactacgctgatgaagttggtgtgatgctgtggcgggacgat
gataaacgtaaattcttcgtcactgaggaaggaattggccaactgaatgattatgctaat
aggctaaaaagacatagagcttga
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