Komagataella phaffii: PAS_chr4_0279
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Entry
PAS_chr4_0279 CDS
T01092
Name
(RefSeq) Essential tripartite DNA replication factor with single-stranded DNA-dependent ATPase
KO
K10742
DNA replication ATP-dependent helicase/nuclease Dna2 [EC:
5.6.2.3
3.1.-.-]
Organism
ppa
Komagataella phaffii
Pathway
ppa03030
DNA replication
Brite
KEGG Orthology (KO) [BR:
ppa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PAS_chr4_0279
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ppa03032
]
PAS_chr4_0279
Enzymes [BR:
ppa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
PAS_chr4_0279
DNA replication proteins [BR:
ppa03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
PAS_chr4_0279
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
PAS_chr4_0279
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Dna2
AAA_12
AAA_11
AAA_30
AAA_19
Viral_helicase1
nSTAND3
Cas_Cas4
UvrD-helicase
MobB
Helicase_RecD
SRP54
Elongin_A
AAA
AAA_16
PIF1
ResIII
AAA_18
AAA_29
bpMoxR
Motif
Other DBs
NCBI-GeneID:
8200948
NCBI-ProteinID:
XP_002493692
UniProt:
C4R7D8
LinkDB
All DBs
Position
4:join(559692..561917,561965..563932)
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AA seq
1397 aa
AA seq
DB search
MSPPSKRVKPGGRRRTYFFKPEDSLTTNQEEDVLPLAQSTGLQNSLENTMTPTRPRKRVS
KITETLRNRKLNGLSSDDMVFWQGTPKSDSISSLSPDKPTTHNLPSSPTRQIPISNVVYD
PIGELAEKYNTTFDNLASQTPITSTNKMQRRSSDSQPASRKKVGDLFNFEHSPSIRRTKT
AGLENLAIGAPVEGKVGVTKKFEKLLDEFHQSFSGSPVDVPISSKESSKSPGHSASEQDQ
SGFSDELDMDDINHLLEMTQPKPKVQIATPKTELPVSKDTIKEEQDSSFDDTSDDDDFEM
LFNQLESQNSVKKLSTQEKKIRQSDMESVEIFQRHIKQEYANDTRHNKCKENKAKLAVPK
KDVFRYQVVKIRKAKYKLDNSKGEQLILTVSDACSVQRNIVIRDFWAELDIEEGDVIHII
GKDPSLTDKRTNILIWNPDLLLSSTLVSESISCKRRSFLKNKLTFPGESSIPLIVGVIVH
TVFQQCLAAGNITDDFISTLIESELNANLFSIFSINESRETVREKIQEHVPFIKQWHDTY
TRSIPVSKSSTAIGGTKDKAMVSASNILDIEENIWSPVFGLRGLIDVTVEACIKGPNNDG
RFVVPLELKTGSREYISHRAQVSLYSLLVRERYDIDSDYFFLVFTKLKSVQLHNIKQHDL
RLIVQLRNELSGYLKLTNGLNKLPPLIKQSECDRCDVLVPCMALNKLIENGTSEDSGILE
QKYELLTSHLDKEEYKFFFKKWTDMDIDGYRKRQNGGTCLGGLEIIEMEESSVSNYNYRY
VLNRDCNSSNAPLTSAQFSKYDRILVSDEEGHYALAVGCIDLITPTTVIIRTDRRIVNSS
LKLPGFNARNNQTFQSVLSKRDFEMLPAEVKNKTFRIDKNEFYNGLALARFNILNLFLPE
YGDEKRRRMVVELKAPSFSNKPLPYNVSKLGSFNPDQLAAVKKALCTEDYSLILGMPGTG
KTTVIAQIIRIMVANGKSVLLTSHTHSAVDSILLKLLDDGIDFYRVGSEAKIHPLVRKFM
PQKRGSADMNSIEDFQRMIHQAPVVAATCMGVGDLVFNYRTFDYCIVDEASQVSMPFCLG
PLRFCDKFILVGDHFQLPPLVKNPEARNQGLDRSLFKILSEKHPQSVVSLSYQYRMCADV
MLLSNKLIYENRLKCGSDNVAQRSLRIPMKERLDHLLLDPSTPKNRLWLHHIFVEENRVI
FLDHDDVPAKERMSTDRVDNPTEAELVGQIVDSLINCGCDSKEIGVMSFYRAQVKLMKTR
LVSHVQNVEVMTADQFQGRDKECIIISLVRSNATNSVGNLLKEWRRINVAITRAKSKLLI
LGSRKTLEQLETLKAFLSLLKSRGWIYRLPLGADSVYKGLKQDNHKTEPARKDNSKMSLK
MIKSRPILKDIFNDLVN
NT seq
4194 nt
NT seq
+upstream
nt +downstream
nt
atgagccctcctagtaagcgagttaagcccggtggtaggagaagaacttattttttcaag
cccgaagactcgttaacaaccaatcaagaggaagatgtattgcctcttgcccaatccacc
gggcttcagaactctttagagaacacaatgacaccaacaaggcctagaaaacgcgtttcc
aaaattactgagaccttgagaaatagaaagttgaatggcctgagttctgatgatatggta
ttttggcaagggacgcctaaatcggattcgatatcatcactttcgccagacaaacctacc
acacataaccttccgtcttctcctacaagacagatcccaatttcaaacgttgtctatgat
ccaattggtgaacttgcagagaagtacaacacaacatttgacaatttagcatcacaaacc
ccaatcacctctaccaataagatgcagagaagatcttctgattcacagccagcgtcaaga
aagaaagtgggcgatttgtttaattttgaacattctccttcaattcgacgaactaaaact
gctggattagaaaatctcgccattggtgctcctgttgagggcaaagttggagtaacgaaa
aagtttgaaaagcttcttgatgagtttcatcaaagttttagtggctcacctgtagatgta
cccatcagctctaaggaatcatcaaaatcacctggtcattctgccagtgagcaagaccaa
tccggattttccgatgagcttgatatggacgacattaatcacttactggaaatgacgcag
ccaaagccaaaagttcaaatagcgacaccaaaaactgaactgcccgtatcaaaagacaca
ataaaagaggagcaagactcttcgtttgatgacactagcgatgatgatgactttgaaatg
ttattcaaccaattggaaagtcaaaactctgtaaagaagctatcaactcaggaaaagaaa
atcagacaatcagatatggagtctgtagaaatttttcagagacatattaaacaggaatat
gcaaacgatacaaggcacaataaatgtaaggagaataaagcaaagcttgcggtgccgaag
aaagacgtatttcggtatcaagttgtgaagattcgaaaggccaagtataagcttgacaat
tcaaaaggcgaacaattgatactcacagtttctgatgcctgttcagtgcaaaggaatatt
gtaatcagggatttttgggcagaattagacattgaagagggggatgtaatccacatcata
gggaaggatcccagtctgaccgacaagagaactaacattttgatctggaatcctgatttg
ctactttcttccactttagtaagtgaatctataagttgcaaaagaagatcttttctcaag
aataagctcacctttccaggcgagtcttccattcctttgattgtgggggtaattgttcat
acagtttttcaacaatgtcttgccgctggaaacattaccgatgactttatcagtaccctg
attgagagtgaattgaatgctaatctattttccatatttagcatcaatgaatcgagagaa
acggtgagggagaaaatccaggagcacgttcccttcatcaagcaatggcatgatacatat
acaagaagcattccagtctcaaaatcatcgactgcaattggtgggactaaagataaggcc
atggtttctgctagtaatattttagatattgaagagaatatctggtctccagtgtttggc
ttaagagggctcatagatgtcactgtggaggcatgcatcaaagggcctaacaatgatgga
aggtttgttgtacccctggaactaaaaaccgggtcaagagagtatatctcacatagagcg
caggtttctctttattctttactggttagagaaagatatgatatagactcagattacttc
tttcttgtttttacaaagctcaagagtgttcaattacataatatcaaacaacatgatctc
agacttattgtgcagttgcgcaatgagctttctggttacctcaaactgacaaatgggttg
aataaattacctcccctgatcaaacaatccgagtgcgatagatgcgacgttttagttccc
tgcatggctttgaacaagctaattgaaaatgggacatccgaagacagtggaattctggag
caaaaatatgagctgttgacgagccatttggataaagaagaatacaaattttttttcaaa
aaatggacagatatggacattgacggctacagaaaaagacagaacggaggaacatgctta
ggagggttggaaattattgagatggaagaatcttccgtatctaactacaactatcgctat
gtcttgaatcgtgactgtaattcatcgaatgcaccattaacttctgctcagttctccaag
tatgacagaattttagtaagcgatgaagaaggtcattatgcattggcagttggttgtatt
gatcttataaccccgactacggtaatcattagaactgatagaagaatcgttaactcttcc
ttgaagctgccaggatttaatgcaagaaacaatcaaacctttcaatctgtgctgtccaag
agggattttgagatgttaccggcggaggtaaaaaataaaactttcaggatagacaaaaat
gagttttacaatggcttggcattagccaggttcaatattttgaacttgtttttacctgaa
tacggggatgagaaaaggagaagaatggttgttgagttgaaggcacccagcttttcaaat
aaacctcttccttacaacgtttcgaagcttgggtcttttaatcctgaccagcttgcagcc
gtcaagaaagcactgtgtactgaggactatagtttgattttgggaatgccaggtactggc
aaaactacggtcattgcacagataataagaattatggtagccaacggaaaatccgtatta
ctaacctcccatactcattctgctgtggatagcattcttctaaagctactggatgatggt
atagacttctaccgtgttggttctgaggctaaaattcaccccttggttcgaaaattcatg
ccccaaaaacgtggttccgctgatatgaatagtattgaagatttccagagaatgattcat
caagcacctgtggttgccgctacctgcatgggagttggagacttggtattcaactaccga
acgttcgattattgtattgttgatgaagcttcacaggtgtccatgccattctgtttggga
cctttgagattctgtgataaattcattcttgtaggcgaccatttccaactacctccctta
gtgaaaaatcctgaagctcgtaatcagggcttggacagatcattgtttaagattttgagt
gagaagcatcctcaaagtgtcgtctctttgagctatcaatatcgcatgtgcgcagacgtg
atgcttctatccaacaaactaatttatgaaaaccggttaaaatgtggtagcgataacgtt
gcccaacggtctttaagaattccaatgaaagagagactggatcacttactgcttgatcca
agtacaccgaaaaatcgattgtggcttcaccacatctttgtagaagagaacagggttatc
ttcttggaccatgatgacgttccagcaaaagaaagaatgtcgacagatagagtggacaac
ccaactgaagcagaactggttggccaaattgttgacagtcttatcaattgtgggtgtgac
agcaaggagattggtgtgatgtcgttttatcgagcccaggtaaaattgatgaaaacaaga
cttgtttctcatgtgcaaaatgtggaggtcatgacagcagatcagtttcaaggaagggat
aaagaatgcattataatatcactagttcgatccaacgctaccaactcagtgggtaatcta
ctaaaagagtggagacgaatcaacgttgccattaccagagccaaatcaaagttactaatt
ctcggcagcaggaagacattggaacaacttgaaactctgaaagcctttttgtcactattg
aaaagtagaggatggatttacagactgccgcttggagctgattccgtttacaaaggcctc
aagcaagataaccataagacagagccagccagaaaagacaattccaaaatgtcattgaaa
atgataaaatccaggccaatattgaaggacattttcaatgacttggtaaactaa
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