Komagataella phaffii: PAS_chr4_0354
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Entry
PAS_chr4_0354 CDS
T01092
Name
(RefSeq) Nucleoporin, essential subunit of the nuclear pore complex (NPC)
KO
K14308
nuclear pore complex protein Nup54
Organism
ppa
Komagataella phaffii
Pathway
ppa03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
ppa00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
PAS_chr4_0354
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppa03019
]
PAS_chr4_0354
Messenger RNA biogenesis [BR:
ppa03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
PAS_chr4_0354
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nup54
Nucleoporin_FG
Motif
Other DBs
NCBI-GeneID:
8200795
NCBI-ProteinID:
XP_002493777
UniProt:
C4R7M3
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All DBs
Position
4:complement(714912..716525)
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AA seq
537 aa
AA seq
DB search
MSFNFGAKTNAAPGNTSTGGFSFGSNTSNNAAPAAGSSSFSFGAKPTSGGLNLNTNPSSS
NSGGLFGAKPAGTTGASTGLFGANTGANTGNTSNTTSGGLFGNNNNTNVNNTASGGLFGN
NASNANNTTSGGLFGNANANPNNGNTNNAGSGGLFGGNNNTASGGLFGNKGTSTNSGGLF
GTSNTGNTTNTGAPSGGLFGSTNNTGTSSGLFGGNTSTNTSNTAGGLFGNNANTNANNQV
NNNVPTSAQPSFAWSQQQKSQPSNALQQMQSNQAVATFNNNSNNYTPTITDQIIKVKNSW
DPSSPNCMLKTHFYNKLPSNESLANVQRPQDELPEEWEKAMSNRPTKYNSIPVKAKGFDD
LLTRANTQTEHVRQSRIILNTINDNLTDLGEKHDLNTSARLTECKVKYKNLSKKLLRLAI
ILSVLKSRGYPLSTDEEHLKLEFEKLFNTLNDPAGLGRTNELWGRLSNLRERAKNLSQQQ
QKESGLLITQEQVQERDLSTTSKVTDVLGKQQQGIQYLYELIQTDKEKLDKLLEKVN
NT seq
1614 nt
NT seq
+upstream
nt +downstream
nt
atgtctttcaattttggagctaagacgaatgcggcgccaggaaacacttccacgggggga
ttttcctttggatcgaatactagcaacaatgctgcccctgcggctggttcttccagtttt
tcgtttggtgccaaaccaactagcggcgggttgaatctaaacacaaacccttcgtcttcc
aattccggcggactgtttggtgccaagcctgctggaactactggtgcaagcactggtcta
tttggagccaatacgggggccaatacggggaacacttctaataccacatccggtggactg
tttggcaataacaacaacactaatgtaaataatacagcatcgggggggctatttgggaac
aatgcctccaatgccaataacacaacttccggtggactgttcggtaatgccaatgctaat
ccaaataatggcaacacgaacaacgccggatcggggggtttgtttggaggcaataacaat
actgcgtctggaggactgtttggaaacaagggcactagcacgaacagtggaggacttttt
ggtaccagcaacactggaaataccacaaacactggtgccccttcgggaggcttgtttgga
agcactaataatactggtacttccagtgggttatttggtggtaacactagcaccaatacc
tcaaacacagctggcggattattcggtaacaatgccaacacaaatgcaaacaaccaagtg
aacaacaacgttccaacatcggcccaaccttcgtttgcctggagtcagcagcaaaaatca
cagccatctaatgctctgcaacaaatgcaatcaaatcaagcggttgccacgttcaacaat
aattctaataactacactcctaccattacagatcaaatcattaaagtcaagaactcttgg
gatccttcgtcccctaattgtatgttgaaaactcacttttacaacaagcttccttcaaat
gaaagtcttgccaatgtccaaaggccgcaggatgaactaccggaggaatgggaaaaggca
atgtcgaaccgacccaccaagtataattccatccctgttaaggccaagggatttgatgat
ttgttaacaagagccaacacgcaaacagagcatgttcgtcagtccagaattattctcaat
acgataaacgataatcttaccgatctaggtgaaaaacacgatctcaacaccagtgcaagg
ttaaccgagtgcaaagtgaagtacaagaacctgagcaagaaattactcagactcgctata
attctatcggttttgaagtccagaggttacccattatcaactgatgaagagcatttgaag
ttagaatttgaaaagttattcaacactttgaacgatcctgcgggattgggaagaacaaac
gaattatggggtagactttctaatctgagagaaagagccaaaaacctcagtcaacagcag
caaaaagaaagtggtctactcatcacccaagagcaggtccaagagagagatttatccaca
actagtaaagtgacagatgtcctgggcaaacagcaacagggtatccaatatctgtatgag
cttattcaaacagataaagagaaactggacaaactgctggaaaaagtcaactga
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