KEGG   Komagataella phaffii: PAS_chr4_0563
Entry
PAS_chr4_0563     CDS       T01092                                 
Name
(RefSeq) Subunit of the exosome, which is an essential complex present in both nucleus and cytoplasm
  KO
K07573  exosome complex component CSL4
Organism
ppa  Komagataella phaffii
Pathway
ppa03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:ppa00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    PAS_chr4_0563
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ppa03019]
    PAS_chr4_0563
Messenger RNA biogenesis [BR:ppa03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Core exosome factors
     PAS_chr4_0563
 Prokaryotic type
  Archeal mRNA degradation factors
   Exosome components
    Core exosome
     PAS_chr4_0563
SSDB
Motif
Pfam: EXOSC1 CSL4_N
Other DBs
NCBI-GeneID: 8201010
NCBI-ProteinID: XP_002494003
UniProt: C4R899
LinkDB
Position
4:1103152..1104057
AA seq 301 aa
MTIEIPKLAVPGMVLAPEYSGKIPSIEDLNEPETGKDCRCHFFAGPGTRLDNLELGKENS
TSQIPTITATVLGQVCVFLRSDEENVEAKKSENREYVVIVVPFKNNKIEYEDSQVPHISK
KDEAYLKGSSLPQEGDIVLVRVTRISQRQANVEVLAVEGRGNVGEESGVGSNGSGAIASG
GGSGASSFINAIATSASLIAQRSDIGETFKGIIRSQDVQSTNRDKVQINKCFRPGDVLRA
IVISLGDGSNYYMSTARNDLGVILAKSNGGAGNAMYAVDWQTMIDPTTGVIEERKCAKPF
S
NT seq 906 nt   +upstreamnt  +downstreamnt
atgacaatcgaaatacccaagttggctgtccctggaatggtcttggctcctgagtattcg
ggcaagataccttccattgaagacttgaatgaacctgaaacaggtaaagattgcagatgc
cacttttttgctggtcctggcaccagattggataatttagaactaggcaaagagaactcc
acatcacagatcccaaccataacggcaaccgtactgggacaagtctgtgtttttttgagg
agtgatgaagagaatgtagaggcaaagaagtcagaaaatcgtgaatacgtggtgattgta
gtccccttcaagaataacaagattgaatacgaagactctcaagttcctcatataagtaaa
aaagatgaagcttacctgaagggaagtagtcttcctcaagaaggtgacattgttctagta
agagtcacaagaatatctcaaaggcaagcaaatgttgaagtgttagccgtggaaggaaga
ggtaatgttggtgaagaatcaggagtgggttcgaacggatctggagccattgcttctggt
ggaggatctggagcttcctcttttatcaatgctatagcgacctctgcatcgctgattgct
caaaggtccgacattggagaaaccttcaaaggaattataaggtcacaagacgttcagtcc
actaatagagataaagtccagataaataaatgctttcgtccaggagatgtgttgagagca
atcgtaatctccctaggtgatggttccaattactacatgtccacagcaagaaacgacctt
ggggttatcctggctaaatccaacggcggtgcaggtaatgccatgtacgctgttgattgg
caaacgatgatagatcctactacaggggttatagaagagaggaagtgtgccaaacccttc
tcataa

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