KEGG   Komagataella phaffii: PAS_chr4_0906
Entry
PAS_chr4_0906     CDS       T01092                                 
Name
(RefSeq) RNA polymerase II subunit
  KO
K03015  DNA-directed RNA polymerase II subunit RPB7
Organism
ppa  Komagataella phaffii
Pathway
ppa03020  RNA polymerase
ppa03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:ppa00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    PAS_chr4_0906
  09124 Replication and repair
   03420 Nucleotide excision repair
    PAS_chr4_0906
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:ppa03021]
    PAS_chr4_0906
   03019 Messenger RNA biogenesis [BR:ppa03019]
    PAS_chr4_0906
   03400 DNA repair and recombination proteins [BR:ppa03400]
    PAS_chr4_0906
Transcription machinery [BR:ppa03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol II specific subunits
     PAS_chr4_0906
Messenger RNA biogenesis [BR:ppa03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     PAS_chr4_0906
DNA repair and recombination proteins [BR:ppa03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      PAS_chr4_0906
SSDB
Motif
Pfam: SHS2_Rpb7-N S1
Other DBs
NCBI-GeneID: 8201310
NCBI-ProteinID: XP_002494355
UniProt: C4R9A1
Structure
LinkDB
Position
4:1697020..1697535
AA seq 171 aa
MFFLKDLSLILTLHPSYFGPQMNQYLREKLLTDVEGTCTGQFGYIVTVLDGMNIDVGKGR
IIPGSGSAEFEVKYRAVVWKPFKGEVVDAIVSNVSPIGFFADVGPLNVFVSTRLIPDNLV
YNPSNSPPAYMSNDELITKGSKVRLKVVGTRTDVNEIYAIGSIKEDFLGAI
NT seq 516 nt   +upstreamnt  +downstreamnt
atgttctttcttaaagatctttctttaattttgactcttcatccgtcatactttggaccc
cagatgaatcaatatcttcgagaaaagctactcactgatgtagagggtacttgtacaggt
caatttggatatattgtcactgtcctagatgggatgaatattgacgtcggaaagggtcga
attattccaggatccggttctgcagagtttgaagtcaagtatcgggctgttgtatggaaa
cccttcaagggtgaagttgtcgatgctattgtttctaatgtttcccctataggattcttt
gctgatgtaggaccactgaatgtttttgtaagcacgaggttaattccagataatcttgtg
tacaatccttcaaactctccacctgcgtatatgtctaatgacgagctcattacaaaggga
agtaaggtaagactgaaagtagtgggaacgagaacggacgttaatgaaatatatgctatt
ggatctattaaagaagattttcttggagccatataa

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