Komagataella phaffii: PAS_chr4_0906
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Entry
PAS_chr4_0906 CDS
T01092
Name
(RefSeq) RNA polymerase II subunit
KO
K03015
DNA-directed RNA polymerase II subunit RPB7
Organism
ppa
Komagataella phaffii
Pathway
ppa03020
RNA polymerase
ppa03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ppa00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
PAS_chr4_0906
09124 Replication and repair
03420 Nucleotide excision repair
PAS_chr4_0906
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ppa03021
]
PAS_chr4_0906
03019 Messenger RNA biogenesis [BR:
ppa03019
]
PAS_chr4_0906
03400 DNA repair and recombination proteins [BR:
ppa03400
]
PAS_chr4_0906
Transcription machinery [BR:
ppa03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Pol II specific subunits
PAS_chr4_0906
Messenger RNA biogenesis [BR:
ppa03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
PAS_chr4_0906
DNA repair and recombination proteins [BR:
ppa03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
PAS_chr4_0906
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SHS2_Rpb7-N
S1
Motif
Other DBs
NCBI-GeneID:
8201310
NCBI-ProteinID:
XP_002494355
UniProt:
C4R9A1
Structure
PDB
PDBj
LinkDB
All DBs
Position
4:1697020..1697535
Genome browser
AA seq
171 aa
AA seq
DB search
MFFLKDLSLILTLHPSYFGPQMNQYLREKLLTDVEGTCTGQFGYIVTVLDGMNIDVGKGR
IIPGSGSAEFEVKYRAVVWKPFKGEVVDAIVSNVSPIGFFADVGPLNVFVSTRLIPDNLV
YNPSNSPPAYMSNDELITKGSKVRLKVVGTRTDVNEIYAIGSIKEDFLGAI
NT seq
516 nt
NT seq
+upstream
nt +downstream
nt
atgttctttcttaaagatctttctttaattttgactcttcatccgtcatactttggaccc
cagatgaatcaatatcttcgagaaaagctactcactgatgtagagggtacttgtacaggt
caatttggatatattgtcactgtcctagatgggatgaatattgacgtcggaaagggtcga
attattccaggatccggttctgcagagtttgaagtcaagtatcgggctgttgtatggaaa
cccttcaagggtgaagttgtcgatgctattgtttctaatgtttcccctataggattcttt
gctgatgtaggaccactgaatgtttttgtaagcacgaggttaattccagataatcttgtg
tacaatccttcaaactctccacctgcgtatatgtctaatgacgagctcattacaaaggga
agtaaggtaagactgaaagtagtgggaacgagaacggacgttaatgaaatatatgctatt
ggatctattaaagaagattttcttggagccatataa
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integrated database retrieval system