Pseudomonas paraeruginosa: B7D75_03390
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Entry
B7D75_03390 CDS
T08722
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
ppaa
Pseudomonas paraeruginosa
Pathway
ppaa03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ppaa00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
B7D75_03390 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ppaa03021
]
B7D75_03390 (rpoC)
03400 DNA repair and recombination proteins [BR:
ppaa03400
]
B7D75_03390 (rpoC)
Enzymes [BR:
ppaa01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
B7D75_03390 (rpoC)
Transcription machinery [BR:
ppaa03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
B7D75_03390 (rpoC)
DNA repair and recombination proteins [BR:
ppaa03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
B7D75_03390 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
ApbA_C
DUF3150
gerPA
Motif
Other DBs
NCBI-ProteinID:
AVR66069
UniProt:
A0ABD7JTF2
LinkDB
All DBs
Position
689623..693822
Genome browser
AA seq
1399 aa
AA seq
DB search
MKDLLNLLKNQGQIEEFDAIRIGLASPEMIRSWSFGEVKKPETINYRTFKPERDGLFCAK
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVALAKVRRERMGHIELASPVAHIWFLKSL
PSRIGLLLDMTLRDIERVLYFESYVVIDPGMTTLEKGQLLNDEQYFEALEEFGDDFDARM
GAEAVHELLNAIDLEHEIGRLREEIPQTNSETKIKKLSKRLKLMEAFQGSGNKPEWMVLT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPT
LRLHQCGLPKKMALELFKPFIFGKLEGRGMATTIKAAKKMVERELPEVWDVLAEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVMGLYYMTREAINAKGEGMAFADLQEVDRAYRSG
QASLHARVKVRINEKVKGEDGQLTANTRIVDTTVGRALLFQVVPAGLPFDVVNQSMKKKA
ISKLINHCYRVVGLKDTVIFADQLMYTGFAYSTISGVSIGVNDFVIPDEKARIINAATDE
VKEIESQYASGLVTQGEKYNKVIDLWSKANDEVSKAMMANLSKEKVVDREGKEVDQESFN
SMYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVTEIDCGTEHGLLMSPHIEGGDVVEPLGERVL
GRVIARDVFKPGSDEVIVPAGTLIDEKWVDFLEVMSVDEVVVRSPITCETRHGICAMCYG
RDLARGHRVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRTSAADNVQVKNGGTIRL
HNLKHVVRADGALVAVSRSGELAVADDFGRERERYKLPYGAVISVKEGDKVDPGAIVAKW
DPHTHPIVTEVDGTVAFVGMEEGITVKRQTDELTGLTNIEVMDPKDRPAAGKDIRPAVKL
IDAAGKDLLLPGTDVPAQYFLPANALVNLTDGAKVSIGDVVARIPQETSKTRDITGGLPR
VADLFEARRPKEPSILAEISGTISFGKETKGKRRLVITPNDGSDPYEELIPKWRHLNVFE
GEQVNRGEVISDGPSNPHDILRLLGVSSLAKYIVNEIQDVYRLQGVKINDKHIETILRQM
LRKVEVSESGDSSFIKGDQVELTQVLEENEQLGTEDKFPAKYERVLLGITKASLSTESFI
SAASFQETTRVLTEAAVTGKRDFLRGLKENVVVGRLIPAGTGLAYHSERKRQRDLGKPQR
VSASEAEAALTEALNSSGN
NT seq
4200 nt
NT seq
+upstream
nt +downstream
nt
ttgaaagacttgcttaatctgttgaaaaaccagggtcaaatcgaagagttcgatgccatc
cgtattggcctggcttcgcccgagatgattcgttcctggtctttcggcgaagttaaaaag
ccggaaaccatcaactaccgtaccttcaagccggagcgcgacggcctgttctgcgccaag
atcttcggcccggtgaaggactacgagtgcctgtgcggcaagtacaagcgcctcaagcac
cgtggtgtgatctgcgagaagtgcggcgtggaagtcgccctggccaaggtgcgccgcgag
cgcatgggccacatcgagctggcttcgccggtcgcccacatctggttcctgaagtcgctg
ccgtcccgtatcggcctgctgctggacatgaccctgcgcgatatcgagcgcgtgctctat
ttcgagagctacgtggtgatcgatccgggcatgaccaccctggaaaagggccagctgctg
aacgacgagcaatacttcgaggctctcgaggagttcggtgacgatttcgatgctcgcatg
ggcgccgaagccgttcacgaactgctcaacgccatcgacctggagcacgagatcggccgc
ctgcgcgaagagattccgcagaccaactcggaaaccaagatcaagaagctgtccaagcgc
ctgaagctgatggaagccttccagggctccggcaacaaacccgagtggatggtcctgacc
gtcctgccggtgctgccgccggacctgcgcccgctggttccgctggacggcggtcgcttc
gcgacttccgacctgaacgacctgtatcgtcgggtgatcaaccgtaacaaccgcctgaag
cgcctgctcgacctggccgctccggacatcatcgtgcgcaacgaaaagcgcatgctgcag
gaggccgtcgacgccctgctcgacaacggccgtcgcggtcgcgccatcaccggctcgaac
aagcgtccgctgaagtcgctggccgacatgatcaagggcaagcaaggtcgcttccgtcag
aacctcctcggcaagcgcgtggactactccggtcgttccgtgatcaccgtgggcccgacc
ctgcgcctgcaccagtgcggtctgccgaagaagatggccctggagctgttcaagccgttc
atcttcggcaagctggaaggtcgtggcatggccaccaccatcaaggccgccaagaaaatg
gtcgagcgcgagctgcccgaggtctgggacgttctcgccgaggtcatccgcgagcatccg
gttctcctgaaccgtgcgccgaccctgcaccgtctgggcatccaggcgttcgagccggtc
ctcatcgaaggcaaggcgatccagctgcacccgctggtctgcgccgcgtacaacgccgac
ttcgacggtgaccagatggccgtccacgttccgctgaccctcgaggcccagctggaagcg
cgcgcgctgatgatgtccaccaacaacatcctgtcgcccgccaacggcgagccgatcatc
gttccgtcgcaggacgtggtaatgggtctgtactacatgacccgtgaagcgatcaatgcg
aagggcgagggcatggccttcgccgacctgcaggaagtcgaccgcgcctaccgcagcggc
caggcgtccctgcacgcccgggtgaaggtacgcatcaacgagaaggtcaagggcgaggac
ggtcaactgaccgccaatacccgcatcgtcgacaccaccgtcggccgcgcgctgctgttc
caggtcgttccggccggtctgccgttcgacgtggtcaaccagtcgatgaagaagaaggcg
atctccaagctgatcaaccactgctaccgcgtggtgggtctgaaggacaccgtcatcttc
gccgaccagctgatgtacaccggtttcgcctattcgaccatttccggcgtctccatcggc
gtcaacgacttcgtcatcccggacgagaaggcgcgcatcatcaacgccgccaccgacgaa
gtgaaggaaatcgagagccagtacgcctccggcctggtaacccagggcgagaagtacaac
aaggtgatcgacctctggtcgaaggccaacgacgaagtgtccaaggcgatgatggccaac
ctctcgaaagagaaggtcgtcgatcgcgagggcaaggaagtcgaccaggagtccttcaac
tccatgtacatgatggccgactccggtgcgcggggttccgcggcccagatccgccagctg
gcgggcatgcgcggcctgatggccaagccggacggctcgatcatcgagaccccgatcacc
gctaacttccgtgaaggtctgaacgtactccagtacttcatctccacccacggtgcgcgt
aagggtctggcggataccgcgctgaagaccgcgaactccggttacctgacccgtcgcctg
gtcgacgtggcccaggacctggtggtgaccgagatcgattgtggcaccgagcacggcctg
ctgatgtcgccgcacatcgaaggcggcgacgtggtcgagccgctcggcgagcgcgtgctc
ggccgcgtgatcgcgcgtgacgtgttcaagccgggcagcgacgaagtcatcgtgccggcc
ggtaccctgatcgacgagaagtgggtcgatttcctcgaggtgatgagcgtcgacgaagtc
gtcgtgcgttcgccgatcacctgcgaaacccgtcatggcatctgcgccatgtgctacggt
cgcgacctggcccgtggccatcgcgtcaacatcggtgaagcggtcggcgtcatcgccgcg
cagtccatcggtgagccgggcacccagctgaccatgcgtaccttccacatcggtggtgcg
gccagccggacctcggctgccgacaacgtccaggtgaagaacggcggcaccatccgcctg
cacaacctgaagcatgtggtgcgtgccgacggcgcgctggtcgcggtatcgcgttccggc
gagctggcggtcgccgacgacttcggtcgcgagcgcgagcgctacaagctgccgtacggt
gcggtgatttcggtcaaggaaggtgacaaggtcgacccgggcgccatcgtcgccaagtgg
gacccgcacacccacccgatcgtcaccgaggtggacggtaccgtggccttcgtgggcatg
gaggagggcatcaccgtcaagcgtcagaccgacgaactgaccggcctgaccaacatcgaa
gtgatggatccgaaagaccgtccggctgccggcaaggacatccgtccggccgtgaagctg
atcgatgccgcgggcaaggacctgctgctgccgggtaccgacgtaccggcgcagtacttc
ctgccggccaacgccctggtcaacctgaccgacggcgccaaggtgagcatcggtgacgtt
gtcgcacgtattccgcaggaaacctcgaagacccgcgacatcaccggtggtctgccgcgc
gttgccgacctgttcgaggcccgtcgtccgaaagagccttcgatcctggcggaaatcagc
ggcaccatctccttcggcaaggagaccaagggcaagcgccgtctggtcatcacgccgaac
gatggcagcgatccgtacgaggagctgattccgaagtggcgtcacctgaacgtgttcgaa
ggcgaacaggtgaaccgcggcgaagtcatctccgacggcccgagcaacccgcacgacatc
ctgcgcctgctgggcgtgagttcgctggcgaagtacatcgtcaacgagatccaggacgtc
taccgtctgcagggcgtgaagatcaacgacaagcacatcgagaccatcctgcgtcagatg
ctgcgcaaggtcgaagtcagcgagtccggtgattccagcttcatcaaaggcgaccaggtg
gaactcacccaggtgctggaagagaacgaacagctcggtaccgaggacaagttcccggcc
aagtacgaacgcgttctgctgggtatcaccaaggcctccctgtcgaccgagtcgttcatc
tccgcggcgtcgttccaggagaccacccgcgtcctcaccgaagcggcggtcaccggcaag
cgcgacttcctgcgcggcctgaaggagaacgtggtcgtgggtcgcctgatcccggccggt
accggtctggcttaccacagcgagcgcaagcgtcagcgcgacctcggcaagccgcagcgt
gtgagtgccagcgaggcggaagccgcactgaccgaagcgctgaactcgagcggtaactaa
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integrated database retrieval system
