Pseudomonas paraeruginosa: B7D75_04985
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Entry
B7D75_04985 CDS
T08722
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
ppaa
Pseudomonas paraeruginosa
Pathway
ppaa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppaa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
B7D75_04985
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppaa03019
]
B7D75_04985
Enzymes [BR:
ppaa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
B7D75_04985
Messenger RNA biogenesis [BR:
ppaa03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
B7D75_04985
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AVR66356
UniProt:
A0ABD7K6P0
LinkDB
All DBs
Position
1023315..1024658
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AA seq
447 aa
AA seq
DB search
MTFASLGLLDPLLKALEGLGLHTPTPIQAQAIPPALKGRDLLAAAQTGTGKTAAFALPLL
QRLTLEGPQVAANSVRALVLVPTRELAEQVHGSIRDYGQHLPLRTAVAYGGVSINPQMMK
LRKGVDVLVATPGRLLDLYRQNAVQFARLQALVLDEADRMLDLGFARELDELFAALPRKR
QTLLFSATFSDAIRTLAGELLRDPLSIEVSPRNTAAKSVRQWLVPVDKKRKAELFCHLLQ
ANRWRQALVFAKTRKSVEELVGLLQRQGIAADSIHGDKPQPARLRALQRFKAGEVDLLVA
TDVAARGLDIEEMPLVVNFDLPIVAEDYVHRIGRTGRAGATGQALSLVCADEVELLAAIE
TLIGQTLQRREEPDFEPEHRVPQTAPGGVVLKKPKKPKKPKAAEATGKPGQIHLGTWFDS
SAPKVRAVRKAPGFGAAGKPKKRPSGK
NT seq
1344 nt
NT seq
+upstream
nt +downstream
nt
atgacgttcgcctccctcggtctgctcgaccccctgctcaaggccctcgaagggctcggc
ctgcacacgcccacgccgatccaggcccaggccattccgccggcgctcaagggccgcgac
ctgctcgcagcggcccagaccggcaccggcaagaccgccgctttcgccctgccgctgctg
cagcggctgaccctggaggggccgcaggtcgcagccaactcggtgcgcgcactggtactg
gttccgacccgcgaactggccgagcaggtccacggcagtattcgcgactacggccagcac
ctgccgctgcgtaccgcggtggcctatggcggggtcagcatcaatccgcagatgatgaag
ctgcgcaagggcgtggacgtcctcgtcgccaccccgggccgcctgctcgacctgtaccgg
cagaacgcggtgcagttcgcccggctccaggcgctggtgctggacgaggccgatcgcatg
ctcgacctcggtttcgcccgcgaactggacgagctgttcgccgcgctgccgcgcaagcgc
cagaccctgctgttctccgcgaccttctccgacgccatccgcacgttggccggcgaactg
ctgcgcgacccgctgtccatcgaggtcagtccgcgcaataccgcggcgaagagcgtcagg
caatggctggttccggtggacaagaagcgcaaggccgagctcttctgtcacctgttgcag
gccaatcgctggcgccaggcgctggtcttcgccaagacccggaagagtgtcgaagaactg
gtcggattgttgcagcggcagggtatcgccgccgactcgatccatggcgacaagccgcag
ccggcgcgattgcgcgcgctacagcgattcaaggccggcgaggtcgacctgctggtggcc
accgacgtcgccgcgcgaggcctggacatcgaggaaatgccgctggtggtcaacttcgac
ctgccgatcgtcgccgaggactacgtgcaccggatcggccgcaccggccgcgccggcgct
accggccaggcgctgtcgctggtctgcgccgacgaggtggaactgctggcggcgatcgag
acgctgatcggccagaccctgcagcgccgcgaagagcccgacttcgagccggagcaccgg
gtgccgcagaccgcgccgggtggggtggtgctgaaaaaaccgaagaagccgaagaaaccc
aaggccgccgaggccaccggtaagcccggccagatccacctgggcacctggttcgacagc
agcgcgccgaaggtcagggcggtacgcaaggcgccgggcttcggcgcggcgggcaagccg
aagaagcggccgtccgggaagtag
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