Pseudomonas paraeruginosa: B7D75_10295
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Entry
B7D75_10295 CDS
T08722
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
ppaa
Pseudomonas paraeruginosa
Pathway
ppaa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppaa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
B7D75_10295
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppaa03019
]
B7D75_10295
03009 Ribosome biogenesis [BR:
ppaa03009
]
B7D75_10295
Enzymes [BR:
ppaa01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
B7D75_10295
Messenger RNA biogenesis [BR:
ppaa03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
B7D75_10295
Ribosome biogenesis [BR:
ppaa03009
]
Prokaryotic type
rRNA processing factors
B7D75_10295
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
AVR67328
LinkDB
All DBs
Position
complement(2147387..2150557)
Genome browser
AA seq
1056 aa
AA seq
DB search
MKRMLINATQPEELRVALVDGQRLFDLDIESGAREQKKANIYKGRITRVEPSLEAAFVDF
GAERHGFLPLKEISREYFKKSPEGRINIKEVLSEGQEVIVQVEKEERGNKGAALTTFISL
AGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLNAPADMGLIVRTAGLGRSTEELQW
DLDYLLQLWSAIKEASGERGAPFLIYQESNVIIRAIRDYLRQDIGEVLIDSIDAQEEALN
FIRQVMPQYASKVKLYQDSVPLFNRFQIESQIETAFQREVKLPSGGSIVIDPTEALVSID
INSARATKGGDIEETALQTNLEAAEEIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEERV
REALEADRARVQVGRISRFGLLEMSRQRLRPSLGETSGIVCPRCNGQGIIRDVESLSLAI
LRLIEEEALKDRTAEVRARVPFQVAAFLLNEKRNAITKIELRTRARIFILPDDHLETPHF
EVQRLRDDSPELVAGQTSYEMATVEHEDAQPVSSTRTLVRQEAAVKTVAPQQPAPQAQEP
VEAPKPMPEPSLFQGLVKSLVGLFAGKEQPAAKPAESAKPAAERQSRQDERRNGRQQNRR
RDGRDGNRRDEERKPREERAERQPREERADRPNREERNERRREERAERPNREERQPREAR
EERAERPAREERQPREGREERSERRREERAERPAREERQPREGREERAERPVREERQPRE
ERQARDAAALEAEALPNEEALEQDDQDDTDGERPRRRSRGQRRRSNRRERQREVSGEQEG
SEAAENGAAPLNTVAAAAAAGIAVASEAQESSAEQAPLASESAPESASETAPTGETSESS
ESAEASASEAAATDTPVVVSLIENEADQSTLLVAQSAEEALSISESVEARSVIESVPAAD
TAEETAAPAAPATVEAAPSEPVVTEEPTPAPAATPANATGRALNDPREKRRLQREAERLA
REAAAAAEAATQATPAAIEESPVAASEAPAVQEEPTVAQVEEEAVQAEAPAQEQAQEVVQ
ASPEASNETETETETETAEEEHAKKPEESETSRPHA
NT seq
3171 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgctgatcaacgcgactcaacccgaagagttgcgtgttgcactggtcgac
ggccaacgcctgttcgacctcgacatcgagtcgggcgctcgcgagcagaagaaggccaac
atctacaagggccgtatcactcgcgtcgaacccagcctcgaagccgccttcgtcgacttc
ggcgccgaacgccacggcttcctccccctcaaagaaatctcccgcgaatacttcaagaaa
tcccccgaaggccggatcaacatcaaggaagtcctgagcgaaggccaggaagtcatcgtt
caggtcgagaaggaagagcgcggcaacaagggcgccgccctgaccaccttcatcagcctg
gccggccgctacctggtgctgatgccgaacaacccgcgcgccggcggcatctcccgccgc
atcgaaggcgaagagcgcaacgaactgcgcgaagcgctgaacggcctcaacgccccggcc
gacatgggcctgatcgtgcgcaccgccggcctgggccgcagcaccgaggaactgcagtgg
gacctcgactacctgctgcaactctggagcgccatcaaggaagcctccggcgagcgtggc
gcgcccttcctgatctaccaggaaagcaacgtcatcatccgcgccatccgcgactacctg
cgccaggatatcggcgaagtgctgatcgacagcatcgacgcccaggaagaagccctgaac
ttcatccgccaggtgatgccgcagtacgccagcaaggtcaagctgtaccaagacagcgtc
ccgctgttcaaccgcttccagatcgagagccagatcgagaccgccttccagcgcgaagtg
aagctgccgtccggcggctccatcgtcatcgacccgaccgaagccctggtatccatcgac
atcaactcggcacgcgcgaccaagggcggcgacatcgaggaaaccgcgctgcagaccaac
ctggaagccgccgaggaaatcgcccgccagttgcgcctgcgcgacatcggcggactgatc
gtgatcgacttcatcgacatgaccccggcgaagaaccagcgcgccgtggaagaacgcgtc
cgcgaagccctcgaggccgaccgcgcgcgcgtccaggtcggccgcatctcgcgcttcggc
ctgctggaaatgtcccgccagcgcctgcgtccatccctcggcgagaccagcggcatcgtc
tgcccgcgctgcaacgggcagggcatcatccgcgacgtcgagtcgctgtcgctggccatc
ctgcgcctgatcgaggaagaagccctgaaggaccgcaccgcggaagtccgcgcccgcgtt
ccgttccaggtggccgctttcctgctcaacgagaagcgcaacgccatcaccaagatcgaa
ctgcgtacccgcgcgcgcatcttcattctgccggacgaccacctggaaaccccgcacttc
gaagttcagcgcctgcgcgacgatagcccggaactggtcgccggccagactagctatgag
atggccaccgtcgagcacgaagatgcccagccggtcagctcgacccgcaccctggtccgc
caggaggccgcggtcaagaccgtcgcgccgcagcaacccgccccgcaggcccaggagccg
gtcgaggcgcccaagcccatgcccgagccgagcctgttccaaggcctggtgaagtcgctg
gtcggcctgttcgcaggcaaggagcaaccggccgccaagcctgccgagagcgccaagccg
gccgccgagcgccagtcgcgccaggacgagcgccgcaacggccgccagcagaaccgtcgc
cgcgacggccgcgatggcaatcgtcgcgacgaagaacgcaagccgcgcgaagagcgcgcc
gagcgccagccgcgtgaagaacgcgccgaccgcccgaaccgcgaagagcgcaacgagcgt
cgccgcgaggagcgcgccgagcgtccgaaccgcgaggagcgccagccgcgcgaagcgcgt
gaggaacgcgccgagcgtccggcccgcgaagagcgtcagccgcgcgaaggtcgcgaagag
cgtagcgagcgtcgccgcgaggaacgtgccgagcgaccggctcgcgaggagcgccagcca
cgcgaaggtcgtgaggagcgcgccgaacgcccggtccgcgaggagcgccagccgcgcgag
gaacgccaggcccgtgacgccgcggcgctggaagccgaagcgctgcccaacgaggaagcc
ctggagcaggatgaccaggacgataccgatggcgaacgtccgcgccgccgctcccgcggc
cagcgccgtcgcagcaatcgccgcgaacgccagcgcgaagtcagtggcgagcaggaaggc
agcgaagccgccgagaatggcgccgctccgctgaacaccgtggcagccgccgcggccgcc
ggcatcgctgtcgccagcgaagcacaggaatccagcgcggagcaggctccgctcgccagc
gaaagcgcgcccgaatccgcctccgagactgcgccgaccggcgaaaccagcgagagcagc
gaaagcgccgaggcaagcgccagtgaagccgccgcgaccgataccccggtcgtcgtcagc
ctgatcgagaacgaagccgaccagagcaccctgctggtggcgcaaagcgccgaggaagcc
ctctccatcagcgaaagcgtcgaggctcgcagcgtcatcgagagcgttccggcagcggac
actgccgaagaaaccgctgccccggcagctccggcgaccgtcgaagcggcaccgagcgaa
ccggtggtcaccgaggagccgaccccggccccagcggcgactccggccaatgccaccggc
cgcgccctcaacgatccgcgcgagaagcgtcgcctgcagcgcgaagccgaacgcctggca
cgcgaagccgccgccgcggccgaggcagcaacccaggccacccctgccgccatcgaggaa
agccctgtcgcagccagcgaggcgccggctgtccaggaagagcccacggtcgcccaggtg
gaagaggaagccgtccaggccgaagctccggctcaggagcaggcccaggaggtcgtgcag
gccagccctgaagcctctaacgagaccgagaccgagaccgagaccgagaccgccgaagaa
gagcacgcgaaaaagcccgaggaaagcgaaacctctcggccgcacgcctga
DBGET
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