Pseudomonas paraeruginosa: B7D75_18705
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Entry
B7D75_18705 CDS
T08722
Symbol
rnd
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
ppaa
Pseudomonas paraeruginosa
Brite
KEGG Orthology (KO) [BR:
ppaa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ppaa03016
]
B7D75_18705 (rnd)
Enzymes [BR:
ppaa01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
B7D75_18705 (rnd)
Transfer RNA biogenesis [BR:
ppaa03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
B7D75_18705 (rnd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
RNAseD_HRDC_C
Ribosomal_L27_C
Motif
Other DBs
NCBI-ProteinID:
AVR70870
LinkDB
All DBs
Position
complement(3951839..3952963)
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AA seq
374 aa
AA seq
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MTAPEIQWIRDDASLAQQCREWRTQPYLALDTEFMRVDTFYPAAGLVQVGDGRREWLIDP
LLVRDWGPFAELLEDPRVVKVLHACSEDLEVFLRLTGSLPVPLFDTQLAAAYLGMAHSMG
YSKLVKEVLDIDLPKDETRSDWLQRPLTEMQMRYAADDVQHLAQVYLALDARLSEEKRAW
LLEDGAELVANLCRESDPREAYREVKLGWRLRPQQLAVLRELCAWREEQARLRNRPRNHV
LRERTLWPLARLLPKNKTDLAAIEDMHPRTVRQDGDFLIELIAEAARLPQSEWPEALPEP
LPPEVTPLLKNLRAIGQREAERLGMAPELMLRKKILEALLKSGYPHGPYELPDSLRGWRR
ERMGQALLNALESA
NT seq
1125 nt
NT seq
+upstream
nt +downstream
nt
gtgaccgcgcccgaaatccagtggatccgcgatgatgccagcctggcgcagcaatgccgg
gaatggcgcacacagccgtacctcgcgctcgataccgagttcatgcgcgtcgataccttc
tatcccgcggccggtctggtgcaggtgggcgatggccggcgggagtggctgatcgacccg
ttgctggtccgggactggggccccttcgccgaactgctcgaggatccgcgggtggtgaag
gtgctgcacgcctgcagcgaagacctcgaggtgttcctgcgcctgaccggcagcctgccg
gtgccgttgttcgatacccagctggctgccgcctacctcggcatggctcactcgatgggc
tactcgaagctggtgaaggaggtgctggatatcgacctgcccaaggacgagacccgttcc
gactggttgcaacggccgctcaccgagatgcagatgcgctacgccgccgacgacgtccag
cacctcgcccaggtctacctggccctggacgcgcggctgagcgaggagaagcgcgcctgg
ctgctggaggatggcgccgaactggttgccaacctgtgtcgcgagagcgatccgcgcgag
gcctatcgcgaggtcaagctgggttggcgcctgcgcccgcagcagctggcggtgctccgc
gaactgtgcgcctggcgcgaggagcaggcgcgcctgcgcaaccggccgcgcaaccatgtg
ctgcgcgagcgtaccctgtggccgctggcgcgcctgctgccgaagaacaagactgacctg
gcggcgatcgaggacatgcatccgcgcacggtgcgccaggacggcgacttcctcatcgag
ctgatcgccgaggccgcccgcttgccgcagagcgagtggccggaggcgctgcccgagccg
ctgccgccggaagtcacgccgttgctgaagaacctgcgcgccatcggccagcgcgaggcg
gagcgactgggcatggcgcctgaactgatgctgcgcaagaagatcctcgaggcactgctc
aagagcggttatccccacggtccctacgaactgcccgattccctgcgcggctggcgccgc
gaacgcatgggccaggccctgctgaatgccctggagagcgcatga
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