Pseudomonas paraeruginosa: B7D75_25670
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Entry
B7D75_25670 CDS
T08722
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
ppaa
Pseudomonas paraeruginosa
Pathway
ppaa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppaa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
B7D75_25670
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppaa03019
]
B7D75_25670
03016 Transfer RNA biogenesis [BR:
ppaa03016
]
B7D75_25670
Enzymes [BR:
ppaa01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
B7D75_25670
Messenger RNA biogenesis [BR:
ppaa03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
B7D75_25670
Transfer RNA biogenesis [BR:
ppaa03016
]
Prokaryotic type
tRNA degradation factors
B7D75_25670
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
WHD_RNase_R
RNase_II_C_S1
OB_Dis3
MCM5_C
Motif
Other DBs
NCBI-ProteinID:
AVR70122
LinkDB
All DBs
Position
complement(5404605..5407325)
Genome browser
AA seq
906 aa
AA seq
DB search
MADWQNLDPEAAREAEKYENPIPSRELILAHLAERGAPATRSQLLDEFGLAGEEPEEALR
RRLRAMERDGQLIYTRRGAYAPVDKLDLIRGRISGHRDGFGFLIPDDGSDDLFLSPTQMR
LVFDGDRALARVSGHDRRGRREGQLVEVIERAHEIVVGRYFEESGIGVVVADNPKIQQEV
LIPPGKTGKARHNQFVQVRIEQWPSIHRQAQGEIVEVLGDYMAPGMEIEVALRSYDIPHV
WPAAVEKEAARLKPEVAEKDKQKRIDLRQVPFVTIDGEDARDFDDAVYAESRRGGGWRLF
VAIADVSHYVKVGSALDEEAAKRGNSVYFPERVIPMLPEVLSNGLCSLNPLVDRLAMVCE
MTLSKAGKLTGYQFYEAVIHSHARLTYTKVSQLLERPDSVEAENLRQQLPGVVPHLQQLY
ALYKALLAGRHVRGAIDFETQETRIVFGADRKISEIRPTQRNDAHRLIEECMLCANVATA
RFLQKHGIPSLYRVHDGPPQEKLNNLRQFLGELGLSLGRGKAAPTPGDYQELLEKIRDRA
DFRLIQTVMLRSLSQAVYSPDNNGHFGLNYDAYTHFTSPIRRYPDLLVHRAIRSVIRSKV
ETPHVQRAGAASMPKARIYPYDELRLDQLGEQCSMTERRADEATRDVTNWLKCEYMRERV
GETFPGVITAVTGFGLFVELTDIFVEGLVHVTALPGDYYHFDAVHHRLSGERTGRSFRLG
DTTEVVVARVDLDERKIDFELAGNVLSAPIGRKKRNGDKSANAGKAPKGRKGASVPEVDL
EPALASPDAAVVPRRKAGKVQALPPVAPELLAQAAEMLGNTDVRKSREVKKALLAEARVG
DGGGKDKGGKKGKAAPAGKNAKGKARGGKPAAAKPGKPTKHRKGPSKPKADSAPAATGAR
KRKAKS
NT seq
2721 nt
NT seq
+upstream
nt +downstream
nt
atggccgattggcaaaacctcgatcccgaggccgctcgcgaagcggaaaagtacgaaaac
cccattcccagccgggaactgatcctggctcatctggccgagcgaggcgccccggcgacc
cgttcccagctactcgacgagttcgggctcgccggcgaggagccggaagaagccctgcgt
cgacgcctgcgtgccatggaacgcgacgggcagcttatctatacacgtcgcggtgcctat
gcgccggtggacaagctggacctgatccgcggccgcatcagcgggcaccgtgacggcttc
ggcttcctcatccccgacgatggcagcgacgacctgttcctcagcccgacccagatgcgt
ctggtgttcgacggcgaccgtgccctggcccgggtatccggccacgatcgccgcggccgc
cgcgaaggccagctggtcgaggtgatcgagcgtgcccacgagatcgtggtcggccgctac
ttcgaggaaagcggcatcggcgtggtggtcgcggacaatccgaagatccagcaggaagtc
ctgatcccgccgggcaagactggcaaggccaggcacaaccagttcgtccaggtgcgcatc
gagcagtggccgagcatccatcgccaggctcagggcgagatcgtcgaggtgctcggcgac
tacatggcgccgggcatggaaatcgaggtcgccctgcgcagctacgacattccgcacgtg
tggccggccgcggtggagaaggaagcggccaggctcaagccggaagtggcggagaaggac
aagcagaagcgcatcgacctgcgtcaggtgccgttcgtcaccatcgatggcgaggacgcc
cgcgacttcgacgacgccgtgtacgccgagtccaggcgtggcggcggctggcgcctgttc
gtggcgatcgccgacgtctcgcattatgtgaaggtcggctcggcgctggacgaggaagcg
gccaagcgcggcaactcggtgtacttccccgagcgggtgattccgatgctgccggaagtg
ctgtccaacggcctctgctcgctgaatccgctggtcgaccgcctggccatggtctgcgag
atgaccctgtccaaggccggcaagctcaccggctaccagttctacgaagcggtgatccac
tcccatgcgcgcctgacctacaccaaggtcagccagttgctcgagcgtcccgacagcgtc
gaggccgagaacctgcgccagcagttgcccggggtggtgccgcatctgcaacaactctac
gcgctgtacaaggccctgctggccggtcgtcacgtgcgcggcgcgatcgatttcgagacc
caggagacccgcatcgtcttcggcgccgaccggaagatctcggaaatccgcccgacccag
cgcaacgatgcgcaccgtctgatcgaggaatgcatgctctgcgccaacgtggcgaccgcg
cgcttcctgcagaagcacggcattccgtcgctgtaccgggtgcacgacggcccgccccag
gagaaactcaacaacctgcgccagttcctcggtgagctggggctcagcctgggtcgcggc
aaggccgcgccgaccccgggcgactaccaggaattgctggagaagatccgcgaccgcgcc
gacttccgcctgatccagacggtcatgctgcgttcgctcagccaggcggtgtacagcccg
gacaacaatggccacttcggcctcaactatgacgcctacacccacttcacctcgccgatc
cggcgctaccccgacctgctggtgcaccgcgcgatccgcagcgtgatccgctccaaggtg
gagactccgcacgtgcagcgggcgggtgcggcaagcatgcccaaggcgcgcatctatccg
tacgacgaattgcgcctggaccagttgggcgagcagtgctcgatgaccgagcggcgtgcc
gacgaggcgacccgcgacgtgaccaactggctgaaatgcgaatacatgcgcgagcgggtc
ggcgagaccttccctggcgtaatcaccgccgtcaccggtttcggcctgttcgtcgagctg
accgatatcttcgtcgaaggcctggtgcatgtgaccgcgttgcccggcgactactatcat
ttcgacgccgtgcaccatcgcctcagcggtgaacgcaccgggcgcagcttccgtctcggc
gacaccacggaagtggtagtggcgcgggtcgacctggacgaacggaagatcgatttcgag
ctggccgggaacgtgctgagcgcgccgatcggacgcaagaagcgtaatggcgacaagtcg
gcgaatgccggcaaggcgccgaaggggcgcaagggtgcctccgtgcccgaagtcgacctg
gagcctgcgctggccagtcccgacgccgcggtggtgccgcgacgcaaggccggcaaggtg
caggcgctgccgccggtggcgccggaactgctggcccaggccgcggagatgctcggcaac
accgacgtacgcaagagtcgcgaagtgaagaaggctctgctcgccgaggcgcgtgtcggc
gacggcggcggcaaggacaagggtgggaagaagggcaaggccgccccggccggcaagaac
gccaagggcaaggccaggggcggcaagcctgctgccgccaagccggggaaaccgaccaag
catcgcaaggggccttccaagccgaaggccgatagcgctccggcagcgaccggggcacgc
aaacgtaaggccaagtcatga
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