Paenibacillus pabuli: KET34_00220
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Entry
KET34_00220 CDS
T09669
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ppab
Paenibacillus pabuli
Pathway
ppab03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ppab00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
KET34_00220 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ppab03400
]
KET34_00220 (mfd)
Enzymes [BR:
ppab01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
KET34_00220 (mfd)
DNA repair and recombination proteins [BR:
ppab03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
KET34_00220 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
SNF2-rel_dom
AAA_30
RecG_dom3_C
AAA_22
UB2H
SecA_DEAD
Motif
Other DBs
NCBI-ProteinID:
UPK44077
LinkDB
All DBs
Position
45133..48660
Genome browser
AA seq
1175 aa
AA seq
DB search
MLQALIQAFSKDPDFGSITAGISSGMKEQLVSGLSGSARQIMLAALHQEMNRPLLVVTHN
MFSAQKIAEDLQEALSPDQVLLYPANELVAAEAAVSSPETLGQRIDVLVRCAQGFRGVVV
IPFSGVRRYVPLPEVMANAQITIKQGNTLELDSFLLEMVKLGYERVERVESRGEMSVRGG
IIDFYPVTSSIAYRVELFDDEIDSIRTFDPADQRSIERISEVTVLPCKELIADRERMEKA
ADAAAILLDQQLEKMTDRQAKLRLREEIHREIELLREHVYFSEMYKYISPLYPENKTIYD
YMPEDTLLVLDEPARLAETSKQLDRDESEWNLHLMQNGKTLPDLHLSADGDDLIYERPFQ
TLFMSIFLRQVPHTQPQNILNFISRGMQDFHGQMNVLKAEMERWQKAGVQVIMLANGEER
LDRMRRVLMDYDIPEPEMLNGHLQTGFEMPSIHLAVVTEGEMFSQKQRKVRKPIRNVDNA
ERIKSYSELKVGDYVVHQNHGIGKYLGIGTLEVGGIHKDYMHILYAGGDKLSVPIEQIDL
IQKYVGSEEKEPKIYKLGGNEWTRVKNKVRTSVQDIADDLIKLYAERQTSKGYGFDKDSA
EQQEFEDMFPYDETRDQVRAIEEIKKDMEQNRPMDRLLCGDVGYGKTEVAIRAAFKAAIE
GKQVAVLVPTTILAQQHYETFRERFSGYPFNINVLSRFRSRKEQNETAKGIKAGTVDIVI
GTHRLLSQDLVFKDLGLLIVDEEQRFGVTHKEKLKKLKTNVDVLTLTATPIPRTLHMSML
GVRDLSVIETPPENRFPVQTYVVEHSQALVREAIERELARGGQVYYLYNRVQGIQEMAAE
ISELVPEAKVGVGHGQMSETELEKTILDFLDGEYDVLVSTSIIETGVDIPNVNTLIVHDA
DKMGLSQLYQLRGRVGRSNRIAYAYFTYQRDKVLTEVAEKRLQSIKEFTELGSGFKIAMR
DLSIRGAGNLLGAEQHGFIASVGFDLYSQMLAEEINKRKVTMLGEEPVPSDQWNTTLDLS
IDAYLPSDYIYDSIQKIEIYKKVAVIASFDDAMELEDELVDRFGDLPEAVINLLAVARLK
VYGKIYGIESISQRGDDLTLKFYEGREHAFELSKIAHIGNQFERRVQFEQGPQMLIHVKG
KGLGDKQLMELVEKFLESMKSAFKSKGELKNVSKV
NT seq
3528 nt
NT seq
+upstream
nt +downstream
nt
ttgttacaagcacttatacaggctttttccaaagatccagacttcgggtcgatcacggcc
gggatttcatccggcatgaaggagcaattggtttcgggcttatcgggatctgcacgtcag
attatgctggccgccttacatcaggaaatgaaccgtccgttgctcgttgtgacacacaat
atgttttccgctcaaaaaatcgcagaagatttacaggaagcgctttcaccagatcaagtg
ctgctatatcctgccaatgaacttgttgccgctgaagctgctgtttccagtccggaaaca
ctgggtcagcgtattgacgtgttggtccgctgcgcccagggattcaggggcgttgttgtt
atcccgttttccggggtaaggcgttatgttccacttccggaagtgatggctaatgctcag
attacaattaaacaaggtaatacgctggagctcgattcattccttctggagatggtgaag
ctcggatatgaacgcgtggagcgtgtagaatcacgcggcgagatgagtgtacgtggagga
attattgatttctatccggtcacatcgtccattgcttatcgtgtggaattgtttgatgat
gagatcgattccattcggacatttgatcctgcagatcagcgttccattgaacgaattagc
gaagtgacggtactgccatgcaaagagttaattgcagatcgggaacgcatggagaaggct
gcggatgcagccgctattttgcttgaccaacagctggagaaaatgacagaccggcaggcg
aagctgcgtctgcgtgaagaaattcatcgcgagatcgaacttttgcgagagcatgtgtat
ttctccgaaatgtataaatatatttcaccgctctatccggaaaacaagacgatctacgac
tacatgccggaagatacattgcttgtactcgacgaaccagcaagacttgcagagacgtcg
aaacagcttgaccgggatgagtcagagtggaatctgcatttgatgcaaaacgggaagacc
cttccggacctgcatctgtcggcagatggggatgatctaatctatgaacgtccattccag
acgctgtttatgtctatctttttacgtcaggtacctcatacccagccgcagaatatcctc
aactttatcagccgtggaatgcaggacttccatggtcagatgaacgtgctcaaagcagag
atggagcgatggcagaaagccggggttcaggtgatcatgctggctaacggtgaggaaagg
ctcgatcggatgcgccgagtactcatggattatgatattccagagccggagatgctgaat
ggtcacctgcaaacgggttttgaaatgccatccatccatctggctgtcgttaccgaaggc
gagatgttctcccagaagcagcgtaaagtgcgcaaaccgattcgtaatgtggacaatgct
gaacgaattaaatcgtatagtgagctgaaagtgggcgattatgtcgttcaccagaatcac
gggattggtaagtatctcgggatcggcacacttgaggttggcggtattcacaaggactac
atgcatattctctatgccggtggagacaaactgtctgtaccgattgagcagattgatctc
attcagaaatatgtcggttcggaagagaaagagccgaaaatatataagctgggcggcaat
gagtggacacgggttaaaaacaaagtccgcacatctgtacaggatattgccgatgatcta
attaagctttatgcggaacgccagacgtcaaaaggctatggtttcgacaaagactctgca
gaacagcaggagttcgaggacatgttcccttatgatgagacacgtgatcaggtgcgtgcc
atcgaggaaatcaagaaggatatggaacaaaatcgtccgatggaccgtttattgtgtgga
gatgtcggttacggcaaaaccgaagttgcaatccgcgctgcattcaaggctgccattgaa
gggaaacaggttgctgtattggtaccgacaactattttggcacagcagcattatgaaacg
ttccgtgagcggttctccggttatccatttaacattaatgtactcagccgattccgttca
cgtaaagagcaaaacgagacggccaagggcattaaggcaggtactgtcgatatcgtcatc
ggtacccatcgcttattgtcacaggacctggtcttcaaggatcttggtctgttaattgta
gatgaagagcagcgcttcggtgtaacgcacaaggagaaactgaaaaagctgaaaaccaac
gtggacgtgctgacactgacagcaacgccgattccgcgtacccttcacatgtccatgctg
ggcgttcgggatctgtcagttatcgagacaccgccggaaaatcgttttccggtacagacg
tatgtcgttgaacacagtcaggcgcttgttcgtgaagcgattgaacgtgaattggctcgc
ggcggtcaagtctattacttgtataaccgtgtgcagggaattcaggagatggctgccgaa
atttccgaattggtccctgaagccaaggttggtgtggggcatggacagatgtcggaaacg
gagctggagaagaccattctggacttcctggatggtgaatatgatgtgctcgtcagcaca
agcattattgagaccggggtggatattcctaacgtaaacaccctgattgtgcatgatgcg
gacaaaatgggactctcccagctgtatcagctgcgtggacgggttggtcgttccaaccgg
attgcgtatgcctatttcacgtaccaacgggataaagtgctgaccgaagttgctgagaaa
cgtctgcaatcgatcaaggaatttaccgaactgggttcgggattcaagatcgcgatgcgc
gatttgtcgatccgcggcgcgggcaatctgcttggagctgagcagcacggcttcattgcg
tctgtcggattcgatctgtattctcagatgctggcagaggaaatcaacaaacgcaaagtg
acaatgcttggggaagagccagtgccatccgatcagtggaatacaacgctggatctcagt
atcgatgcgtacttgccgtctgattatatttatgacagtattcagaagattgagatttat
aaaaaagtggcggttattgcctccttcgacgatgcgatggaactggaagacgaattggtt
gatcgattcggtgaccttccggaagccgtgatcaatctgctggcggtagccagactgaaa
gtttatggcaagatctatggaattgaatccatctcccaacgcggcgatgatcttactttg
aagttctacgaaggccgagaacatgcctttgagctgtcaaaaatcgcacacattggaaat
cagttcgaaagacgtgtacaatttgaacaaggaccccaaatgcttattcatgtcaaaggc
aaagggcttggggacaagcaactgatggagctggtagagaaatttctggagtccatgaaa
agtgcttttaaatcaaagggggaactaaagaatgttagcaaagtataa
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