Paenibacillus pabuli: KET34_00940
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Entry
KET34_00940 CDS
T09669
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
ppab
Paenibacillus pabuli
Pathway
ppab03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppab00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KET34_00940 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppab03019
]
KET34_00940 (rnr)
03016 Transfer RNA biogenesis [BR:
ppab03016
]
KET34_00940 (rnr)
Enzymes [BR:
ppab01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
KET34_00940 (rnr)
Messenger RNA biogenesis [BR:
ppab03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
KET34_00940 (rnr)
Transfer RNA biogenesis [BR:
ppab03016
]
Prokaryotic type
tRNA degradation factors
KET34_00940 (rnr)
BRITE hierarchy
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
OB_Dis3
Motif
Other DBs
NCBI-ProteinID:
UPK44192
LinkDB
All DBs
Position
196544..199318
Genome browser
AA seq
924 aa
AA seq
DB search
MITEQQLLDFMRETAYKPMTYQELEQHFEIEDAADFKAFLIMLNSLEESGKVLLTRNNRY
GMPERMDLVRGRLQAHAKGFAFLIPEDREHPDVYIHANDMKSAMNGDTVFVKVTSQGPSG
GRLEGEIVRIVTRAVTQVVGVFQSHEVYGFVIPDDKRINRDIFIPRTNFHGAVDGQKVVA
KIVSYPEGRAAAEGEVIEILGHKDEPGIDILSVIRKHQLPEAFPDEVVEEAEKAPDAITE
EEIIQQGRRDLRGLNIVTIDGEDAKDLDDAVNVEKLPNGNYRLGVHIADVGYYVRENSKL
DQEAYNRGCSVYLVDRVIPMLPQRLSNGICSLNPQVDRLTLSCEMEFNDQMKVVKHDIFT
SVIKTKERMTYSNVRKILEGEEPELLERYKDLVDDFHLMKEIALKLRAMRMRRGAVDFDF
EESKIIVDAECKPVDIVKRERSIAEQIIEEFMLAANETVAEHFHWLKVPFIYRVHEDPDQ
EKLQNFLAFAANFGHHVKGRGNAIHPRALQSLLEDINGTKEQTVISTMMLRSMKQAKYDS
EMSGHFGLAAEFYSHFTSPIRRYPDLVIHRVIREVIENNGALPENRQEYLAGRMADIAQQ
SSERERVAVEAERDTEKMKKAEYMLDKVGEEFEGMISSVTSFGMFIELENTVEGLIRLSA
LTDDYYHFDDQHMALIGERTSKVFRIGDEVKIRVARVSMEEYTIDFEMVDMKPRGERPGG
FSGGRGGKGGRPAGGGGRGGAKSGSGGFGSSRGGKGGPAGTGGKRGGRPADESSKGGRGG
RSGASNTAGSTGVKGGGKPRGERRAGDAGASVGRSKGAVSFGFGSGKGGYSSTAGGQEGT
SAGGQGNALNSSSRGEGSFKSGKGGGKGGKGGSGRKNTSPSGVFIGEGATPGGVQEGGAL
RRKRKKNKGASANGTAAFVRKKKK
NT seq
2775 nt
NT seq
+upstream
nt +downstream
nt
atgataacagaacaacaattgctcgacttcatgcgggaaaccgcttataaaccgatgact
tatcaggaactggaacagcactttgagattgaagatgcggctgatttcaaagccttttta
attatgcttaattcgctggaggaatccggcaaagtcctgctgacccgcaataaccgctat
ggaatgccagaacgtatggatttggtgcggggacgtctgcaggctcatgcgaaggggttt
gctttcctcatccctgaggatcgggaacaccctgatgtgtacatccacgccaatgatatg
aaaagcgcgatgaacggcgacacggtatttgttaaagtgacttctcaaggtccttccggt
gggcgtttggagggtgagattgtccgtattgttacccgtgcggtcacgcaggtggttgga
gtattccaaagccacgaggtttatggcttcgtcattccggatgacaagcggattaaccga
gatatcttcatcccgcgtacaaattttcatggggctgttgatggacaaaaggttgttgca
aaaatcgtcagctatccagagggccgggcagcagcagaaggtgaagtgatcgagatcctc
ggtcataaggatgaacctggcattgatattttgtcagtgatccgtaaacatcagctgcca
gaagctttcccggatgaagtagtggaagaagcggaaaaagccccagatgccattacggaa
gaagaaattatccagcagggtcgccgcgatctgcgtgggctgaatatcgttacgattgat
ggcgaagacgccaaggatctcgatgatgctgtcaatgtggagaagctgcctaacggcaac
taccgtctgggcgttcatattgccgatgtaggctattatgtacgggaaaattccaagctc
gatcaggaagcctacaaccgcggatgcagcgtgtatttggtggaccgggttattccgatg
ctgccgcagcgtttgtccaacgggatatgtagtttgaacccgcaggtggaccgcttgacc
ctgtcttgtgagatggagttcaacgaccagatgaaggttgtgaaacatgacattttcacg
agtgtgatcaaaaccaaagagcgtatgacgtactccaacgttcgcaaaattcttgaagga
gaagagcctgaattgttggagcgttacaaggacctggtggatgatttccacttgatgaaa
gagattgccttgaagcttcgtgcgatgcgtatgcgccgcggtgcggttgactttgatttt
gaagaatccaaaatcattgtggacgcggaatgcaagccggtggacatcgtgaaacgggag
cgttcgattgcagagcaaatcattgaggaattcatgcttgcagccaatgaaacggttgca
gagcatttccactggttgaaggttcctttcatctaccgtgtgcatgaagatccagatcag
gaaaaactgcaaaattttctcgcctttgcggcgaatttcggacaccatgtcaagggacgt
ggcaacgcgattcatccacgggcgcttcaatccctgcttgaggatattaacggaaccaag
gaacagacggttatcagtacaatgatgctgcgttccatgaaacaggcgaagtatgattcc
gagatgtcgggtcactttggtctggcggcagagttctacagtcactttacatcgccgatc
cgtcgatatcccgatctcgtcattcaccgtgttattcgtgaagtgattgagaacaatggg
gcattgcctgagaaccgtcaggagtatttggctgggcgtatggccgacattgcgcagcag
tcttcggaacgtgagcgtgtggcggttgaagctgagcgggatacggagaaaatgaagaaa
gccgagtacatgcttgataaagtcggcgaagagtttgaaggcatgatcagcagtgtgacc
agcttcggtatgttcattgaactggaaaatacggtagagggtctgattcgcctgagtgcg
ctcacagacgactattaccattttgacgatcaacatatggctctgattggcgaacgtacc
tccaaggtcttccgcattggtgatgaggtgaagattcgtgtggcgcgtgtaagcatggaa
gagtacacgattgactttgaaatggttgacatgaaacctcgcggcgaacgtccaggtggc
ttcagtggtggacgtggcggtaaaggtggacgtcctgctggtggcggcggacgcggcggc
gcgaagagcggttccggtggattcggtagctcccgtggtggtaaaggcggaccagctggt
acgggcggcaaacgtggtggacgtcctgccgatgagagcagcaaaggcggacgtggcggt
cgtagcggagcatcgaacactgcaggaagcacgggtgtcaaaggtggcggtaaaccgaga
ggtgagcgtcgtgctggagatgctggtgcatcagtgggtcggagcaagggagcggtaagc
tttggttttggctcgggcaaaggcggctatagttctacagcgggtggccaggaaggcact
tcagctggtggacaagggaatgctctgaacagcagcagtcgtggtgaaggcagcttcaaa
tccggtaaaggcggaggtaaaggtggcaaaggcggtagtggacgcaaaaacacctcacct
agcggtgtgtttatcggcgaaggagctacaccgggcggtgttcaggaaggtggagcacta
cgccgcaagcgcaagaagaataaaggcgcatctgccaacggaacggcggcttttgtacgg
aagaagaaaaagtaa
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