Paenibacillus pabuli: KET34_08090
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Entry
KET34_08090 CDS
T09669
Symbol
recQ
Name
(GenBank) DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
ppab
Paenibacillus pabuli
Pathway
ppab03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppab00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KET34_08090 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppab03019
]
KET34_08090 (recQ)
03400 DNA repair and recombination proteins [BR:
ppab03400
]
KET34_08090 (recQ)
Enzymes [BR:
ppab01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
KET34_08090 (recQ)
Messenger RNA biogenesis [BR:
ppab03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
KET34_08090 (recQ)
DNA repair and recombination proteins [BR:
ppab03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
KET34_08090 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
Helicase_Sgs1
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
UPK45415
LinkDB
All DBs
Position
1810575..1812455
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AA seq
626 aa
AA seq
DB search
MSVQTPTLEEAQGLLQKYYGYPDFREGQKKIVASLLEREDTLGIMPTGGGKSICYQIPAL
LYSGLTLVVSPLISLMKDQVDALTTAGIAAAYINSTLSGKEVNDRIRAAQRGELKLLYVA
PERLELDWFREEMGYLPISCVAVDEAHCVSQWGHDFRTSYLAVAPFVDSLPERPVVAAFT
ATATPEVMGDILRLLRLQDPQTYVTGLGRDNLAFSVLRGESKKDFVLNYAREHASEPGIV
YAATRKDVDDLHQRLLQAGLPAGRYHAGMTDDERAQSQEQFLYDDIRVMVATNAFGMGID
KSNVRYVLHYSMPKNMEAYVQEAGRAGRDGEPSQCILLFGAQDIITQKFLIEQNPMEGDR
KANDYRKLQQMVDYCYTTRCLRSAQLDYFGEVHEDKPCGICSSCTDDRELVDMTIDAQKI
FSCIHRMRERYGVSLVASVLKGSRAKKVLDYGFNSLPTYGVMGNRTEREIAEIINVMVSE
GYLMLSEGQYPVVRLQPLAVEVLKGQREVMQRVVRKTAATASGTNYGGRRGRDAMPSAVN
ETVFEQLRLIRRDLAAKEHVPSYIIFNDATLREMSVVCPQTERDMLDIKGVGEVKYRKYG
LPFLEFFQKQSGEEVDTDDDAFYEYE
NT seq
1881 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtgcaaacacctacattagaagaagcgcagggtctcctgcaaaaatattatggc
taccccgacttccgtgagggacagaaaaagatcgtagccagcttgctcgaacgcgaagat
acactgggtattatgccaaccgggggcgggaaatcgatctgttatcagatccccgcattg
ttatattcgggactgacgcttgtcgtttccccattgatatcgcttatgaaggaccaggtc
gatgcgctgacgacggctggcattgcagccgcttatattaatagtacgttaagcggcaaa
gaagtgaatgatcgcatccgcgcggcgcagcgcggtgagctgaagttgctctatgtcgcg
cctgagcgactggagctggactggttccgcgaggagatgggctacttgccaatctcgtgc
gttgccgtggatgaggcccactgtgtgtcgcagtggggacatgattttcggacaagctac
ctggcggtagcgccgtttgtggacagtttgccggagcggccggtggttgcggcctttacg
gcaacagcgacgcccgaggtcatgggcgatattctgcggctgctgcgtttgcaggacccg
cagacgtatgtgaccggacttgggcgggataatctggcgtttagcgtgctgcgcggcgag
agcaaaaaggactttgtcctgaattacgcacgtgagcatgcgagcgaaccgggtattgta
tacgccgcgacgcgcaaggacgtggacgatctgcatcagcgtttgctgcaggcgggattg
ccggcaggacgctaccatgccgggatgacggacgatgaacgggcccagagccaagaacag
tttttgtatgatgatattcgggtgatggtggctacgaatgcattcggcatgggaattgat
aaatccaacgtacgttacgtgctgcattacagcatgccgaagaacatggaggcgtatgta
caggaagccggacgtgcaggccgggacggtgagccgagtcaatgtatattgttattcggg
gcacaggacattatcacccagaagtttctgatcgagcagaacccgatggagggcgaccgc
aaagcaaacgattatcggaagctgcagcagatggtcgattattgttacacgacgcggtgt
ctgcgcagtgcgcagttggattactttggcgaggtgcatgaggacaaaccgtgcggcatt
tgcagttcatgtacggacgaccgcgagctggtggatatgacgattgatgcgcagaaaata
ttcagctgcattcatcgcatgcgtgaacggtatggtgtatcgctggtcgcttcggtgctc
aaaggctctcgtgccaaaaaagtgcttgattatggcttcaattccctgccaacttatggc
gtaatgggcaatcgtacagaacgtgagatcgccgagatcatcaacgtcatggtatcggaa
gggtatctgatgctgtccgagggacagtatccggtcgttcgtttgcagccattagcagtg
gaagtactcaaaggccagcgtgaagtaatgcagcgtgtggttcgcaagacagcggcgacg
gcttcgggtacgaactatggcggacgtcgtggacgtgatgcgatgccatctgcggttaac
gagacggtatttgagcagctgcgtctgatccgtcgtgatctggcggcgaaagagcatgtg
ccgtcgtacattattttcaatgacgcgaccttgcgtgagatgagtgtggtatgcccacag
acagaacgtgacatgctggatatcaaaggggtcggtgaggtcaagtaccgcaagtatgga
ctgccattcctggaatttttccagaagcaatcgggcgaagaagtggatacggatgatgac
gctttttatgagtatgagtaa
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