Paenibacillus pabuli: KET34_11550
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Entry
KET34_11550 CDS
T09669
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
ppab
Paenibacillus pabuli
Pathway
ppab03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppab00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KET34_11550
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppab03019
]
KET34_11550
03009 Ribosome biogenesis [BR:
ppab03009
]
KET34_11550
Enzymes [BR:
ppab01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
KET34_11550
Messenger RNA biogenesis [BR:
ppab03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
KET34_11550
Ribosome biogenesis [BR:
ppab03009
]
Prokaryotic type
rRNA helicases
KET34_11550
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_RecD
AAA_19
CMS1
AAA_22
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
UPK46035
LinkDB
All DBs
Position
2461227..2462801
Genome browser
AA seq
524 aa
AA seq
DB search
MTNLNFADFNLEPLVLQAITELGFEEATPIQSKSIPFALEGRDLIGQAQTGTGKTAAFGI
PLISKISKSDEKIRALIMAPTRELAIQVAEEIEKLTRFKGLRSLPIYGGQDIVRQIRALK
RKPQIIIGTPGRLLDHINRKTIKLDDVQTVVLDEADEMLDMGFMEDIQSILKQVPDERQT
MLFSATMPPNIQKLAQQFLNNPEHVSVIPKQVSAPLIDQAYIEVPERQKFEALSRLLDME
SPELAIVFGRTKRRVDELAEALQKRGYSADGLHGDLSQNQRDTVMRKFRDGSIDVLVATD
VAARGLDVSGVTHVVNFDLPQDPESYVHRIGRTGRAGKEGAAWSFVTPREIDHLHFIERV
TRHRIPRKPLPTMAEAVEGKQRLTAERLLEIVQSGELNEYKGIAIQMLEQYDSVQLLSAA
LKLLTGDKKDAQIDLTPEDPIRAKRRKPDVRSGGRKPSGYSGNRSGGGGGYNRDRNSSGG
GRGGYNRDRNSSGSGSREGGYNRDRKPRPSNNEGRRPAKDSSFE
NT seq
1575 nt
NT seq
+upstream
nt +downstream
nt
ttgacaaatttaaatttcgcagattttaatcttgaaccactggtgcttcaagcgatcacc
gaacttgggtttgaagaggcaactccgattcaatccaaatcaatcccttttgctcttgaa
ggcagagacttgatcggtcaagctcaaacgggtactggtaaaaccgctgcatttggtatt
ccattgatcagcaaaatctccaaaagcgatgaaaaaatccgcgccctcattatggcacct
acacgtgaacttgcgattcaagttgccgaagaaatcgaaaaactcacccgcttcaaaggt
ttgcgctccctgccaatttacggaggacaagacatcgttcgtcaaatccgtgcactgaaa
agaaaaccacagatcatcattggtacaccaggacgtctcctggatcatatcaaccgcaaa
acaatcaaacttgatgatgtacaaactgttgtattggatgaagcagatgaaatgctcgac
atgggtttcatggaggatattcaatccatcctgaaacaagttccagacgagcgtcaaacg
atgctgttctcagcaacaatgcctcctaacattcaaaaattggcacaacaattcttgaac
aaccctgagcacgtatccgtgatccctaaacaagtaagcgcacctttgattgaccaagct
tacattgaagtgcctgaacgtcaaaagttcgaagcactcagccgtttgctggatatggaa
tctcctgaactggcgatcgtattcggacgtaccaaacgtcgtgttgacgaattggctgaa
gctctgcaaaaacgtggatattctgctgacggtcttcatggtgacttgtcccaaaaccaa
cgtgatacagtaatgcgtaagttccgtgacggcagcattgatgtacttgttgcaacagac
gtagctgctcgtggtctcgacgtatccggtgtaactcacgttgtgaactttgaccttcca
caagatccggaaagttatgttcaccgtatcggccgtacaggtcgtgcaggtaaagagggt
gctgcatggtcattcgttactccgcgtgaaatcgaccacctgcactttatcgagcgtgta
acacgtcaccgtattccacgcaaacctttgccaacaatggcagaagcggtagaaggcaaa
caacgtttgacagctgagcgtttgctcgaaatcgtacaatctggcgaactgaacgaatac
aaaggtatcgcgattcaaatgcttgagcaatatgattctgttcaactgttgtcggcagcc
ctgaagctcctgactggtgacaagaaagatgctcagattgatctgactcctgaagatccg
atccgtgcgaagcgtcgcaaaccggatgttcgctctggcggacgcaaaccatctggttac
agcggtaaccgcagtggtggtggcggtggttacaaccgtgatcgcaacagcagtggtggc
ggacgtggtgggtacaaccgcgatcgtaacagcagcggaagtggaagcagagagggtggt
tacaaccgtgaccgcaaaccgcgtccaagcaacaacgaaggacgtcgtcctgccaaagat
tcttctttcgaataa
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