Paenibacillus pabuli: KET34_12570
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Entry
KET34_12570 CDS
T09669
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
ppab
Paenibacillus pabuli
Brite
KEGG Orthology (KO) [BR:
ppab00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ppab03032
]
KET34_12570 (topA)
03400 DNA repair and recombination proteins [BR:
ppab03400
]
KET34_12570 (topA)
Enzymes [BR:
ppab01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
KET34_12570 (topA)
DNA replication proteins [BR:
ppab03032
]
Prokaryotic type
DNA Topoisomerases
KET34_12570 (topA)
DNA repair and recombination proteins [BR:
ppab03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
KET34_12570 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_ribbon_Top1
Toprim
Zn_ribbon_RPB9
Toprim_4
Auto_anti-p27
Toprim_3
GramPos_pilinD1
Toprim_2
Motif
Other DBs
NCBI-ProteinID:
UPK46213
LinkDB
All DBs
Position
2709800..2711890
Genome browser
AA seq
696 aa
AA seq
DB search
MADALVIVESPSKAKTIGKYLGSKFIVKASMGHVRDLPKSQIGVEVENDFNPKYITIRGK
GSILKELKDARKKVKKVYLAADPDREGEAIAWHLAHALELDDTADCRVVFNEITKQAVKD
AFKTPRKINMDLVNAQQARRILDRLVGYKISPLLWKKVKKGLSAGRVQSVAVKIILDREN
EINDFEPEEYWSITAKLTADGNPFEAKFHQLNGTKTELGSEAEVQAILKQIEGASFTVKE
VKEKERSRNPSAPFTTSSLQQEAARKLNFRASKTMSVAQQLYEGVDLGKEGTVGLITYMR
TDSTRIAASAQEEAKEYIIGKYGEPFAPETPRNYSKKAANAQDAHEAIRPTSILRDPDSI
KSFMSRDQFRLYKLVWERFIASQMSSAILDTLSVDIAAGDTIFRAAGSKVRFQGFMKVYV
EGNDDGTTEEDRLLPPLKNGDVLENREIEPKQHFTQPPPRYTEARLVKTLEELGIGRPST
YAPTLETIQKRGYVAIEEKKFMPTELGELVIEQMEEFFPEILNVEFTANMEGDLDHVEEG
SEDWVKVLAEFYESFEKRLEFAEEEMKEIEIEDEVSDEICEKCGKPLVYKLGRFGKFLAC
SGFPDCRNTKPIIKDIGVTCPKCKEGHVVERRSKKGRIFYGCDKYPECDFVSWDKPSAKP
CPSCGSLMIEKRNKQGTRLQCTSCDHQEPVEEPEEE
NT seq
2091 nt
NT seq
+upstream
nt +downstream
nt
atggcggatgcactcgtaatcgtggagtcgccctcaaaggcgaagacgatcggcaaatat
ttaggcagcaagttcatcgtaaaagcttcgatgggacatgtgcgcgatttgccaaagagt
cagatcggcgttgaggtagagaacgattttaatccgaaatatattacgatccgcggcaaa
ggttcaattttgaaagaactgaaggatgcacgaaagaaagtgaaaaaagtgtatctcgca
gctgacccggatcgcgaaggagaggctattgcttggcacttggcccatgcacttgaactg
gacgatacggcggattgccgagtagtatttaatgaaattacgaaacaggctgtcaaagat
gcgttcaaaacaccgcgcaagattaatatggatctggttaacgcgcagcaagcaagacgt
attcttgatcggcttgttggatataaaataagtcctttattatggaagaaagtcaaaaaa
ggattgtccgctggccgcgttcagtcggtggccgtcaaaatcattttggatcgtgaaaat
gaaattaatgattttgaaccggaagagtactggagtattactgccaaactgacagcggat
ggaaacccgtttgaagccaagttccatcagttgaacggtaccaaaaccgaacttggcagt
gaggcagaagtacaggctattttaaaacagatcgaaggggcttcttttacagtcaaagaa
gttaaagaaaaagaacgcagccgtaacccttctgctccgtttacaacgagttctctgcag
caggaagccgcacgtaaattgaatttcagagcttccaagacgatgtctgttgcccagcag
ctatatgaaggggtagacctcggaaaagaaggcacagtaggtctcataacgtatatgcgt
acagactctacccgaattgcagcatcggctcaggaagaagcgaaggaatacattattggc
aagtacggtgagccatttgcaccagagacgcctagaaactattccaaaaaggcagccaat
gctcaagacgcgcatgaagcgattcgtccaacttcgatattacgtgatccggattcaatc
aaatcgtttatgagccgcgatcaattccggttgtacaaactggtttgggaacgttttata
gcgagccaaatgtcatctgctattctggatacattatctgtggacattgctgcaggagat
acaattttccgggcagcgggttccaaggttcgttttcagggattcatgaaggtgtatgta
gaaggtaatgatgacggtacaacagaagaagatcgcctgctgcctccattgaaaaatgga
gatgtgctggagaatcgggagattgagccaaaacagcactttactcaaccgccaccacgc
tatacggaagcaaggttggtcaaaacgctggaggaactgggtatagggcgtccgagtaca
tatgcgccaacgctggagaccattcaaaagcgcggatatgttgcaatcgaagagaagaaa
ttcatgccaacggaactgggtgaactggtcattgaacagatggaggagtttttcccggaa
atcctgaatgtggagttcactgcgaacatggaaggtgatcttgaccatgtagaggaaggg
tcggaggattgggtcaaagtactcgcagaattctacgaatcttttgagaaacgtctggag
tttgcagaagaagaaatgaaagaaattgagattgaagatgaagtatcggatgaaatatgt
gagaagtgcggcaaaccgctcgtttataagctgggtcgattcggcaagtttctcgcatgt
tccggatttccggattgccggaataccaagccaattatcaaggatatcggtgtaacctgt
ccgaaatgtaaggaagggcatgttgttgaacgccgcagtaaaaagggacgcattttctac
ggctgcgacaagtatcctgaatgtgattttgtatcatgggataagccatcagcgaaacca
tgtccaagttgcggatcactaatgattgagaagcggaacaaacaggggacacgattacag
tgtacttcatgtgatcatcaagagccggtggaggaaccggaagaagaatga
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