Paenibacillus pabuli: KET34_13000
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Entry
KET34_13000 CDS
T09669
Symbol
rny
Name
(GenBank) ribonuclease Y
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
ppab
Paenibacillus pabuli
Pathway
ppab03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppab00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KET34_13000 (rny)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppab03019
]
KET34_13000 (rny)
Messenger RNA biogenesis [BR:
ppab03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
KET34_13000 (rny)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_Y_N
HD
KH_1
HDOD
KH_KhpA-B
KH_2
Motif
Other DBs
NCBI-ProteinID:
UPK46293
LinkDB
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Position
2798996..2800540
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AA seq
514 aa
AA seq
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MPTTAIMIVLVVAALFIGFGVGYFIRKSLAEAKISSAEEAAVQIVENAKKEAEALKKETV
LEAKDEIHRIRAEAEKDTRERRNEIQRQERRLLQKEESLDKKLESLERKEEQVANKEKRI
DETQQQIEMIYKNQVTELERISNLTMEDARSIILSNVEQEVRHETAQMIKDIEQQAKEEA
DKKSREIITLAIQRCAADHVAETTVSVVTLPNEEMKGRIIGREGRNIRALETLTGIDLII
DDTPEAVILSGFDPIRREIARTALEKLVADGRIHPARIEEMVEKSRKEVDERIREYGEQA
TFEVGVHGLHPDLIKILGRLKFRTSYGQNVLKHSMEVAYLAGLMAGELGEDVTLARRAGL
LHDIGKALDHEVEGSHVEIGVELAKKYKEHPVVINSIASHHGDCEATSVIAMLVGAADAL
SAARPGARRETLETYIKRLEKLEEISESFEGVEKSYAIQAGREVRVMVQPEKIDDAEAFR
LARDITKMIENELDYPGHIKVTVIRETRAVEYAK
NT seq
1545 nt
NT seq
+upstream
nt +downstream
nt
atgccaactactgcaatcatgatcgttctcgttgttgccgcgctattcattgggttcgga
gtaggatattttattcgcaaatctcttgcagaagctaagatctccagtgcggaagaagct
gccgtacaaatcgtggagaacgcgaagaaagaggcagaagcactgaagaaagaaacggtg
ctggaagcgaaggatgaaattcatcgcattcgcgccgaagctgaaaaagacactcgtgaa
cgtcggaacgaaattcaacgacaagaaagacgattgttgcaaaaagaagagtcgctggat
aaaaaattggaatcactcgaacgcaaagaagagcaagtggctaacaaagagaaacgaatt
gatgagacacagcagcaaatcgagatgatctacaaaaaccaggtgacggagctggagcgc
atatccaacctcaccatggaagacgcacgcagtatcatactgtccaacgtagaacaggaa
gttcgtcatgagacggctcaaatgatcaaggacattgaacagcaagcgaaggaagaagcg
gacaaaaagtcccgcgagattattacactcgctatccaacgctgtgcggctgatcacgtg
gcggagacgacggtatccgttgttactttgccaaatgaagaaatgaaaggccggattatc
ggtcgtgaaggacgtaacatccgtgcgcttgaaacccttaccgggattgacctcattatc
gatgatacgccagaagctgttattctgtcgggctttgacccgattcgccgtgaaatcgcc
cgtactgccctcgaaaaactggtggctgatggacgtattcacccggcacggattgaagag
atggtggagaaatcccgcaaagaagtggatgagcgtatccgtgaatacggtgagcaagct
acctttgaagtgggcgtgcatggtctgcatccggacttgattaaaattctgggccggttg
aagttccgtacaagctatggtcaaaacgtcttgaaacattcgatggaagtcgcttatctg
gctggattgatggctggcgaactcggagaagacgtaaccctggcaagacgtgcaggtcta
ttgcatgacatcggtaaagcgctggatcacgaagtggaaggatcacacgtcgaaatcggc
gtggaactagcgaagaaatacaaagaacatccggttgtaatcaacagtatcgcgtcccat
cacggggattgcgaagcgacttcggttattgccatgttggttggcgcagcagatgcgctc
tccgcagcaagaccaggcgcacgccgcgaaacgctggaaacgtatatcaagcgactggag
aagctggaagagatttcggaatcgttcgaaggtgtcgagaaatcgtacgctattcaggcc
ggacgcgaagttcgtgttatggtacagcctgagaaaatcgacgatgctgaagccttccgc
ctcgcgcgtgacatcacgaagatgatcgagaatgaactcgattatccgggtcacatcaaa
gtcaccgtcatccgggaaacccgtgcggttgaatacgcaaaatag
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