Paenibacillus pabuli: KET34_31845
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Entry
KET34_31845 CDS
T09669
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
ppab
Paenibacillus pabuli
Pathway
ppab03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppab00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KET34_31845
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppab03019
]
KET34_31845
03009 Ribosome biogenesis [BR:
ppab03009
]
KET34_31845
Enzymes [BR:
ppab01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
KET34_31845
Messenger RNA biogenesis [BR:
ppab03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
KET34_31845
Ribosome biogenesis [BR:
ppab03009
]
Prokaryotic type
rRNA helicases
KET34_31845
BRITE hierarchy
Motif
Pfam:
DEAD
Helicase_C
ResIII
SNF2-rel_dom
CMS1
AAA_19
Motif
Other DBs
NCBI-ProteinID:
UPK43600
LinkDB
All DBs
Position
complement(7018267..7019823)
Genome browser
AA seq
518 aa
AA seq
DB search
MANFEQLGIRPEWCEILKHQGIAVPTPVQERSIPVLLGGRDIIAEAQTGTGKTLAFLLPI
IQKINVSDRSPQALIIAPTRELALQITEEAKKLTANDDKLHVLAVYGGQDVDKQLRKLQN
GTQIVIGTPGRLLDHLRRGTLKLDNVKKLVLDEADQMLHMGFLDDVETILRELPHKRQTM
LFSATMPKGIRNLAKNYMKDPEDVKVSSKSVIPINQIRQQVLECTDRGKLEALRGMIDTY
RPYLAIIFCRTKRRASKLNEDLREAGYASDELHGDLSQSKRENVMKAFRDAKLQILVATD
VAARGLDVEGVTHVFNYDIPHDAESYIHRIGRTGRAGGTGLAVTFATQHDRPELARIEEG
TNQKLSRIQWTSEGPVASTGATRRSINSQGDDERSGGRSAGTGSARRGAGRTGRSEGGRG
GRGSRGGEGGRSGGRSGGRSGDERGAGRGSARSSDSSRGAAGQGGRGAGRSGDERSSGWG
GRSADKRSSGRGGEGSRRPDSAGRGPGRGDRRDSRRGR
NT seq
1557 nt
NT seq
+upstream
nt +downstream
nt
ttggcaaactttgaacaactgggcattcgcccggaatggtgcgagatcctgaaacatcag
ggcatcgccgtgccgactccggtacaggagcgttcgattccggtattgctgggtgggcgc
gatattattgctgaggcacagacgggtacagggaaaacgctggcttttttgctgccgatt
attcagaaaattaacgtatccgaccgctcgccgcaagcgctgattattgctccaacgcgg
gaactggcgctgcaaattacggaagaagcgaagaaactgactgcaaacgacgataaactg
catgttctcgcggtatatggcggacaggatgtggacaaacagctgcgcaaacttcagaac
ggtacacagatcgtgattggtacgccgggacgtctcctggatcacctgcgtcgtggcacg
ctgaagctggataatgtgaaaaaattggtgctggatgaagcggaccaaatgctgcacatg
ggcttcctggatgatgtggagactattcttcgtgaactgccacacaaacgtcagacgatg
ctgttctcggcaacgatgccgaaaggcattcgcaatctggcgaagaactacatgaaagac
ccggaggatgtgaaggtatcttccaaatccgtgattccgatcaatcagattcgccagcag
gtgctggagtgcacggatcggggcaaacttgaggcgcttcgcggcatgattgatacgtat
cgcccgtatttggcaattattttctgccggacgaagcgtcgtgcatccaagctgaatgaa
gatctgcgcgaagcaggttatgccagtgatgagctgcatggtgatctgtctcaatccaag
cgtgagaatgtaatgaaggcattccgcgatgcgaaactgcaaatcctcgttgctacggat
gttgccgcacgcggactggatgttgaaggcgtaacacatgtattcaactatgatattcca
catgatgcggaaagttatatccaccggatcggccgtacgggtcgggcaggtggtaccgga
ctggctgtgacgtttgcaacacagcatgacagaccggaactggcccgtattgaagaaggc
accaatcagaagctttcccgtattcagtggacaagtgaaggaccggtggcttccaccgga
gcaacccgacgttccatcaacagtcagggagatgatgaacgttcgggcggacgctctgct
gggacaggcagtgctcgtcgcggtgcaggtcgcactggccgcagcgaaggcggacgtggc
ggtcgtggttcccgcggcggagaaggtggacgcagcggtggtcgtagtggcggccgcagt
ggcgacgagcgcggcgcaggccgtggttccgcgcgcagcagcgacagcagtcgcggtgca
gcaggtcaaggcggacgcggtgcaggtcgcagcggcgatgagcgcagcagcggctggggc
ggccgcagcgccgataagcgcagctccgggcgcggcggcgagggttctcgccgcccggac
tccgcaggacgcggtccgggcagaggcgaccgtcgcgattctcgtcgcggacggtaa
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