Paenibacillus pabuli: KET34_32305
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Entry
KET34_32305 CDS
T09669
Name
(GenBank) PD-(D/E)XK nuclease family protein
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
ppab
Paenibacillus pabuli
Pathway
ppab03022
Basal transcription factors
ppab03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ppab00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
KET34_32305
09124 Replication and repair
03420 Nucleotide excision repair
KET34_32305
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ppab03021
]
KET34_32305
03036 Chromosome and associated proteins [BR:
ppab03036
]
KET34_32305
03400 DNA repair and recombination proteins [BR:
ppab03400
]
KET34_32305
Enzymes [BR:
ppab01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
KET34_32305
Transcription machinery [BR:
ppab03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
KET34_32305
Chromosome and associated proteins [BR:
ppab03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
KET34_32305
DNA repair and recombination proteins [BR:
ppab03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
KET34_32305
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C_2
DEAD_2
HBB
DEAD
ResIII
Helicase_C
Motif
Other DBs
NCBI-ProteinID:
UPK43686
LinkDB
All DBs
Position
complement(7130381..7132702)
Genome browser
AA seq
773 aa
AA seq
DB search
MTTAIRISVRPLVEYVYRSGSIRPGFRTNASMQEGTRIHQRVQKDYTEEDLKEVVLEVEL
QHGDLTYVVEGRCDGLIRLDGQLTVDEIKSTAGNLDDLGDGAPVHWAQAMMYAYMYAVQH
DEPRMQVQLTYVHTVTNEERRFRRMLERQELEQFAAELVAGYAPYAEMIVAYEEKRDISV
RELPFPFRKYREGQRKLAGAVYKTIREGQGLMAKAPTGIGKTMSVLFPTVKAIGEGEAKR
LFYLTARTTTRVAAEEAFARMQAEGLKMHVISLTAKDKICFKEEEACDTGQCGMCEGYYD
RINGAVLDMLEHETLMTRPVIEQYARKHRVCPFEFSLDAAYAADAVICDYNYIFDPRISL
KRMLEEQKRKTVLLVDEAHNLVDRGRMMFSAELEKAVFLDVKREFQTLGSGVTAAKAIAD
RTGAIDKYLITLRKNGGDEGKLLQQEAPEELIELLEPFVMVAEQCLVEGGSGNAETDELL
LEAYFTAQNFLRIAKLYDERFITYAECVRSEVRVKLFCLDPSVLLRQTAKGFRSTIHFSA
TLSPLGYYRDMLGAEEEDYTLRIPSPFQREQLDVRLLPLSIRYRDRERSRQPIANMLREL
VAEWPHSNLLVFFPSYPYMREVHGTYMEQPSEAEVVMQEQGMSEEEREAFLNAFQPHPER
TRLVFAVMGGVFSEGVDLPGDRLNGVVVVGAGLPQIGLENNVLRDYYSRTGRNGFNYAYV
FPGMNKVLQAGGRLIRTEEDKGVLVLVDDRFTEEPYRSLLPEEWQDYTRISPQ
NT seq
2322 nt
NT seq
+upstream
nt +downstream
nt
atgacaaccgcaattcgaatatcagtcaggcctttggtggaatatgtgtaccgcagcggc
agcatccgtccagggtttcgcaccaatgcatcgatgcaggagggaacccggatacaccag
cgggtgcagaaggattacacagaagaggatctgaaagaagtggttctcgaagtggaactg
cagcatggagacttgacctacgtggtggaggggcgatgcgacgggctgattcgtctggat
ggtcaactgacggtggatgagatcaaatcaactgcaggaaacctggacgatctgggcgac
ggggctcctgtacactgggcacaggccatgatgtatgcctatatgtacgccgttcagcat
gatgaaccccgtatgcaggtacagcttacatatgtgcacaccgtgaccaatgaagaaaga
cggtttcggcggatgctggaacggcaggagcttgaacagtttgcagcagaactggtggct
ggctacgcgccatatgcagagatgattgtggcctatgaagagaagcgcgatataagtgtg
cgagagctgccttttccttttcgcaaatacagagagggacagcgcaagctggcaggggcc
gtatacaagacgatccgtgagggacaggggctgatggcaaaggcgccaacaggtattggc
aaaacgatgtccgtactgtttcccacggtcaaggccattggtgaaggagaagccaaacga
ctgttctatctgaccgcaagaacgacgacgcgagtggcggcagaagaggcttttgcccgg
atgcaggcggaaggcttgaagatgcatgtcatcagtctgaccgcgaaggacaagatctgt
ttcaaggaagaggaagcctgtgatacgggacagtgtggcatgtgcgaaggatattatgac
cgtattaatggggccgtgctggatatgctggaacatgagacgttaatgacacgcccggtt
attgaacagtacgcgcgcaagcatcgggtatgtccgtttgaattttcactggatgctgcg
tatgcagccgatgcggtgatctgcgattataactatattttcgatccacgcatctcgctc
aaacgcatgctggaggagcaaaagcgcaagacggtattgctggtcgatgaggcacataat
ctggttgatcggggccggatgatgttttcggcagagctggagaaggccgtctttctggat
gtcaaaagggagttccagacgctgggcagcggtgtgaccgccgccaaagccatcgcggat
cgtacgggtgccatcgacaaatacctgattacgcttcgcaaaaatggtggggatgagggc
aaattgctgcaacaggaggcgccggaggaactgattgaactgctggagccttttgtcatg
gttgcggagcaatgccttgtggaaggtggctctggaaatgccgagacggatgaactgctg
ctggaagcctactttaccgcacagaacttcctgcgtattgccaagctgtacgacgaacgc
ttcattacctatgcggaatgtgtgcgaagcgaagtacgagtgaagctgttctgccttgat
ccatccgtgctgctgcgccagacggccaaaggcttccgctccaccattcatttctctgcg
acattgtcaccccttggctattaccgggatatgctaggtgcggaggaagaggattatact
ctgcgtattccttcacctttccagcgggagcagctggatgtgagattgctgccattatcg
attcgctatcgggaccgtgagcgttccagacagcctattgccaatatgctgcgcgagttg
gttgccgagtggcctcatagcaacctgcttgtctttttcccatcctatccatatatgcgc
gaagtacatgggacgtatatggaacagccgagcgaggcagaggttgtgatgcaggagcag
ggtatgagcgaagaggagcgggaggcgttcctgaacgccttccagccgcatcctgaacga
acacgattggtatttgccgttatgggcggtgtattttccgagggtgtcgatctgccgggt
gatcgtctgaatggagttgtggttgtcggtgccggacttccccagattggtctggagaac
aacgtacttcgcgattattatagccggacagggcgcaacggtttcaattatgcctatgtt
ttccccggcatgaacaaggtattgcaggcaggcggaaggctgatacgtacggaagaggac
aagggcgtgttggtgctggttgacgatcgatttaccgaggaaccgtatcgttcattgctg
cctgaagaatggcaggactacacacgaatttcaccccaataa
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integrated database retrieval system
