Paenibacillus pabuli: KET34_33590
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Entry
KET34_33590 CDS
T09669
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
ppab
Paenibacillus pabuli
Pathway
ppab03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppab00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KET34_33590
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppab03019
]
KET34_33590
03009 Ribosome biogenesis [BR:
ppab03009
]
KET34_33590
Enzymes [BR:
ppab01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
KET34_33590
Messenger RNA biogenesis [BR:
ppab03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
KET34_33590
Ribosome biogenesis [BR:
ppab03009
]
Prokaryotic type
rRNA helicases
KET34_33590
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
AAA_19
Helicase_RecD
ERCC3_RAD25_C
AAA_22
Motif
Other DBs
NCBI-ProteinID:
UPK43911
LinkDB
All DBs
Position
7437154..7438599
Genome browser
AA seq
481 aa
AA seq
DB search
MSKQQFKDYGLGEEIVKALDSLGYETPTEVQTKVIPVALENKDLVVKSQTGSGKTAAYGI
PVCELVDWNENKPQALILTPTRELALQVNEDITNIGRFKRIKATALYGQSPFHVQKAELK
QRTHVAVGTPGRVLDHIERGTLPLDRISYLVIDEADEMLNMGFIETVQSIIQALPSERVT
MLFSATFPEDVAKLSRKYMNNPVEIEIKASGLTTATIEHAVIHVPEVNKTALLQDLFIVE
NPDSCIVFCRTQENVDKLFRVMADLDYPADRIHGGMEQDERIEVMNAFRRGQFRYLIATD
VAARGIDITNITHVINYDIPLEKEGYVHRTGRTGRAGKTGKAFTLVTPKDGRRLAEIESY
IGFEIPVVKAPSEDAVDRRREEFEKRLKIVPERKKDKREQLNQQIIKLNFNGGKKKKLRA
VDFVGTIAKIEGVTADDIGIITILDNVTDVEILNGKGPLVLEVMQNTTIKRMQLKVRKGK
K
NT seq
1446 nt
NT seq
+upstream
nt +downstream
nt
atgagtaagcaacaatttaaagattatggacttggcgaagaaatcgtaaaagcgctggat
agcctgggctatgaaaccccaacggaggttcagaccaaagttattccggtagcccttgaa
aataaagatcttgtggtcaaatcccaaacaggcagcgggaaaacagccgcctacggtatt
ccagtctgtgagctggtagattggaacgaaaataaaccccaggctttgatactcacgcca
acccgcgagctggctttgcaagtcaacgaagacattaccaatatcggtcgttttaaacgc
attaaagcaaccgcactatacgggcagtctccttttcatgttcaaaaagccgagttaaaa
caaagaacacatgtcgctgtaggtacacctggaagggtactggaccatatcgaacgcggc
accctgccgctggatcggatctcataccttgtcattgacgaagccgatgagatgctgaat
atgggcttcatcgaaacagtgcagtccattattcaagcactgcctagcgaacgagtgacg
atgttattttccgcgacgttccctgaagatgtagccaagctgtcccgcaaatacatgaac
aacccggtggagattgagatcaaggcaagcggtcttacaacagccacgattgaacatgct
gtgattcatgtaccggaggtgaacaaaacagcgctgcttcaagacttgttcattgtcgag
aacccggatagctgtatcgtgttttgtcgtacgcaagagaacgtggataaactgttccgg
gtcatggcagacctcgattatccagcggatcgcatccacggaggtatggaacaagatgag
cgcatcgaagtgatgaatgcattccgaagaggacaatttcgttatctgattgcaacggat
gtagccgcgcgcgggattgatatcacgaatattacccacgtcatcaactacgatattcct
ttggaaaaagaaggatatgtgcaccgtacaggtcgtacgggccgcgccgggaaaacaggt
aaagcctttactttggttaccccgaaggatggcagacgtctggccgagatcgaatcgtat
atcggatttgaaatccctgtcgttaaagctccttccgaggatgctgtagaccgtcgccgg
gaagagttcgagaagcgtttgaagatcgtgcctgaacgcaaaaaggacaagcgtgaacag
ttgaaccagcagatcataaagctgaacttcaacggaggcaagaaaaagaaactccgtgcg
gtagactttgtgggcaccatcgccaagattgaaggcgtcacggcagacgacatcgggatt
attactattctggacaatgtaaccgatgtggaaattttgaatggcaaaggcccactcgtg
cttgaggttatgcagaatacaacaatcaaacgcatgcagctcaaggttcgcaaaggaaaa
aaataa
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