KEGG   Palaeococcus pacificus: PAP_00020
Entry
PAP_00020         CDS       T03210                                 
Name
(GenBank) DNA polymerase II large subunit
  KO
K02322  DNA polymerase II large subunit [EC:2.7.7.7]
Organism
ppac  Palaeococcus pacificus
Pathway
ppac03030  DNA replication
Brite
KEGG Orthology (KO) [BR:ppac00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    PAP_00020
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:ppac03032]
    PAP_00020
Enzymes [BR:ppac01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     PAP_00020
DNA replication proteins [BR:ppac03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (archaeal)
    D-family DNA polymerases
     PAP_00020
SSDB
Motif
Pfam: PolC_DP2_cat PolC_DP2_N PolC_DP2_central LAGLIDADG_3 Intein_splicing Ribosomal_aS21 zf-DPOE CHP02642 Zn_ribbon_3 DUF7129 DZR
Other DBs
NCBI-ProteinID: AIF68456
UniProt: A0A075LQQ3
LinkDB
Position
3796..9042
AA seq 1748 aa
MSELYSENMKAYFEMLQREIDKAYEVAQKAREQGKDPMREIEVPQATDMAGRVESLVGPK
GVAERIRALAKEYGKELASLKIVDEIIEGKFGDLGSEEKIAEQAVRTALAVLTEGIVSAP
LEGIAYVKIRENPDGSKYLALYYAGPIRSSGGTAQALSVLVGDYVRKKLGLDGYKPTHEE
IERYVEEVDLYHRAVTRLQYHPSADEVRLAIKNIPVEITGEATDQVEVSGYRNLPRVETN
QLRGGAILVLAEGVLQKAKKLLKYIDKLNVEGWEWLKEFVESKESGKKSEAVKSEPLEEA
KEEISVKVEKGFYYGLYETFREKIAPNKKYTKEIIGGRPLFAEPSTNGGFRLRYGRSRTS
GFATWSIHPATMLLVDEFLAVGTQMKTERPGKGCIVTPATTVEGPIVKLKDGSVLRIENY
ETALKVKDDVDEILYLGDVLVNFGDFVENNQTLLPANYAEEWWIQELVKAVEEIYEVKLE
PFAENDEDALEEAADYLDLEKEFLAKLLYDPLRVRPKVEEAIHLSRVLGIPLHPYYTLYW
NTISVEELIRLQEALVNAQIEWDDFRGIKFAKRVLIGEFSVKRALELLGLPHYIDDGFIV
VDYPWSAALLVPLLNLEKKLTPKEFYTPIDLINEVSSIKLRDKGISWIGARMGRPEKAKE
RKMKPPVHVLFPIGLAGGSSRDIYKAYEEGKSTTVEIAHFKCPECGHVDIFPTCPRCNSK
TEHLYTCPKCGHSSTEEKVCPNCRIDMRPYARYSFKVSDYLVPAMRNVRVNTLDKLKGVL
GMSSAFKLAEPLEKGILRAKNDVYVFKDGTIRFDATDAPITHFRPREVGVSVEKLRELGY
THDFEGKPLVSEDQILELKVQDVILPKTAGEYLVRVANFIDDLLEKFYGLERFYNAEKME
DLVGHLVIGLAPHTSAGIIGRIVGFVDALVGYAHPYYHAAKRRNCFPGDTRILVNIDRMP
MRITLKELYELYEGENYENMVYVKRKPKKDIKVYSFDVESGRVVLTDIEDVIKAPSTDHL
IKFELETGRSFETTVDHPVLVYENGEFKEKRAFEVKEGDFILVPKIDFEEPNIEEIDLLE
EFAKFEELQDVIMVRGIAEWLEGIISKEQAKELYDYIRRDSIPLSTLKKILQEKSLSIKD
VPCGAYFGVKRDRVRIRRFVPIKPLLKLIGYYLAEGYARESNSVYQISFSNGDKETREDI
KRALREAFGDGFGIYERGEKITVGSRIIYLLFTRVLKAGSGARDKRVPSFVFKLPREKVR
HLLRAYFEGDGSAIKTAARVVVYSVNKPLLEDIETLLLSKFGIRGYYTMDKNANRGNARG
RLYHIERGNEPPISKVYALNIAGEYYDQFFGEIGFTSERKNSVYDLHKNRNRIKDKYFTE
NGWLLKVKRVEYIKPEEEFVFSLNAKKYHNVIINENIVTHQCDGDEDAVMLLLDALLNFS
KYYLPEKRGGKMDAPLVVTTRLDPREVDSEVHNMDVVRYYPLEFYEATYELKSPKEVKVI
ERVEDRLGKPEMYEGIKFTHDSDDIALGPKLSMYKQLGDMEEKVRLQLEVARKIRAVDEH
HVAETIINSHLIPDLRGNLRSFTRQTFRCVKCNTKYRRPPLNGKCPKCGGKIVLTVSKGA
IEKYLSTAKMLVTEFKVLDYTRQRICITEKDIDTLFTNVFPKVQTLLPIGTSDDVCQKMV
LTRKGVLREKPKKNGNGKSWNPSNDFKKHLKKAGRPEKEEPRKETPKLKEKKPKRKKVIG
LDEFFGTK
NT seq 5247 nt   +upstreamnt  +downstreamnt
atgagtgaactctacagtgagaatatgaaagcttattttgagatgctccagagggagatt
gataaggcttatgaagttgctcaaaaggcgcgtgagcagggaaaagaccctatgcgagag
attgaggttcctcaagctaccgatatggcaggacgtgttgaaagcctagttggtcctaaa
ggcgttgctgagaggattagagctttggcaaaggaatacggtaaggagttggcttctctt
aaaatcgttgatgaaatcatagagggcaaattcggcgatttgggaagcgaagagaaaata
gctgagcaagctgtgaggactgctttggctgttctcactgagggcatagtttctgctcca
ctcgaaggtatagcttacgttaaaataagggagaacccggacggcagcaagtacttggcc
ttatactatgctgggcctattaggagtagcggtggaacagctcaagcactgagtgttctc
gttggtgactacgttaggaaaaagcttggcttggatgggtataagccaactcatgaagag
atagagcgctacgttgaggaagtggacttataccacagggcagttacgcgcttgcaatac
cacccttcggcggatgaagttaggttggcgataaagaacattccagtggaaataacgggt
gaagctacggatcaagttgaggtgagcggatataggaacctgcctagagtagaaacgaac
cagcttagaggtggagccatcttagttttggccgaaggtgtgcttcaaaaggccaaaaag
ctcctcaagtacattgacaagcttaatgttgagggatgggagtggctcaaggagtttgtg
gagagtaaggagagtggaaagaaaagcgaagccgtgaagagcgagcctttggaggaagcc
aaggaagagataagtgtcaaagtcgaaaagggcttctactatgggttatatgaaacattt
agggagaaaatcgctccaaataagaagtacacgaaggaaataattgggggaaggcccctc
tttgcggagccttcaacaaacggtggcttccgcttgaggtacgggcgctcaaggacgagc
ggctttgcaacgtggtcaatccatccggcaacaatgctcctcgttgacgagtttttagcg
gtaggaacacaaatgaaaactgagagacctggaaaagggtgtattgtaacaccagccaca
acggttgaaggtcctatagtcaagctcaaagatggaagcgttctccgcattgagaattat
gagactgccttgaaagttaaggatgatgttgatgaaatcctctatttgggggatgtcctc
gtaaacttcggcgacttcgtggagaacaaccaaacccttttgcctgcgaattatgcagag
gagtggtggattcaagagcttgtcaaagccgttgaagagatttatgaagttaaattggag
cctttcgcagaaaacgacgaggatgctttggaagaggcagcggactacttagatttggaa
aaagagtttttagctaaactcctctacgatccgcttagggttaggcccaaggtggaggag
gccattcacctctctcgcgttttggggattcctctccacccttactacactctctattgg
aacacaataagtgttgaagagctcattaggctgcaagaagctttggtgaatgctcaaata
gaatgggatgattttaggggaattaagtttgctaagagggttttgataggtgagttcagt
gttaaaagggcgcttgagcttttaggtctacctcactatatagacgacggctttatagtc
gttgattatccctggagtgctgcgcttttagttcctctcttaaacctcgagaagaagctc
acgccaaaggagttctacactccaatagatttaataaacgaagtcagttcaataaagctc
cgcgataagggcataagctggattggtgcaagaatggggaggcccgagaaggccaaggaa
agaaagatgaaaccgcccgttcacgtgctctttccaataggcttggctggaggaagctcg
agagacatatacaaggcatatgaagaaggcaaatcaacaacggttgagatagcccacttt
aaatgtcccgagtgcggccacgtggacatctttccaacatgtccccgctgtaactccaag
acggagcatctctacacatgtccaaagtgcggccatagctcaacggaagaaaaagtctgc
cctaactgtaggatagacatgaggccctatgctagatactctttcaaggttagcgattac
ctagttccagcaatgaggaacgtgcgcgttaatactcttgataagcttaaaggcgttttg
ggaatgagttcggcatttaagctggccgagccccttgagaagggtattcttagggctaaa
aacgacgtttacgtgttcaaagacggcacgattaggtttgatgctacagatgctccaatc
actcacttccgcccgagggaagttggggttagcgttgaaaaattgagagagctgggctac
acccacgacttcgaagggaagcccttggtgagcgaagaccagattttggagcttaaggtt
caagatgttatactcccaaagactgccggtgagtacttggttagggtagccaactttata
gacgacttgctcgagaagttttacggtcttgagaggttttataatgctgagaagatggag
gacttggttggtcaccttgttataggcttagctccgcatacatcagcaggaataattggg
cgtatagtgggcttcgttgacgctttggttggttacgcccacccgtattaccatgcagcg
aagaggaggaactgcttcccaggagatacgaggattttagttaatatcgaccgcatgcca
atgagaattacgcttaaagaactctacgaactctatgagggtgagaactatgagaacatg
gtttacgttaagagaaagcctaagaaggatattaaggtttattctttcgacgtagagagt
ggaagggttgttttaacggacatcgaggatgttataaaggctccttcaactgaccatcta
ataaaatttgagcttgagacagggaggagctttgaaacgacggttgatcatccggttttg
gtctatgaaaacggcgaattcaaggaaaagagagctttcgaggttaaggaaggcgacttc
atattggtgccaaagattgattttgaagagccgaatatagaggaaattgatctcctggaa
gagtttgccaagtttgaggagcttcaagatgtgataatggttcgtggaattgctgagtgg
cttgaaggaattatctccaaagagcaagctaaagagctctacgattacataaggagagac
tcaattccgctttcaacgctcaagaaaatacttcaagagaaaagcttatcaatcaaggat
gtcccgtgcggggcctactttggagtgaagcgcgatcgcgtgaggattaggcgtttcgtc
cctattaagccgctcttaaagctcattggctactatcttgcggagggctacgcgagggag
agcaacagcgtttatcagataagcttctcaaacggggataaagagactagagaagatatt
aaacgtgcccttagggaagcttttggagatggctttggaatctacgagcgtggggagaaa
ataactgttggctcaaggatcatctatttactgttcactagagttttaaaagctggaagc
ggagctagagataaaagagttccatcctttgtctttaaactcccgagggaaaaggttagg
cacttgcttcgcgcctactttgaaggggatggaagtgctataaaaacagccgctcgtgta
gttgtttatagtgtcaacaagcctctccttgaagatattgagacactactcttgtccaag
tttggtatcaggggatattacaccatggacaagaatgccaacagagggaacgcccgtgga
agactctatcatattgagcgcggaaacgagccgccaatatctaaggtgtatgctctcaac
atagctggtgaatattatgaccagttctttggggagattggcttcactagtgagcgtaag
aactctgtttatgacttacacaagaacagaaatcgcattaaggataagtactttactgaa
aatggatggctccttaaggtcaagcgtgttgaatacattaaaccagaggaagaatttgtg
ttttcattaaatgcaaagaaataccataatgttataattaatgaaaatattgtaacacac
caatgtgacggcgacgaagatgctgtcatgctccttttggacgctctcctcaacttcagc
aaatactatctcccagagaagcgcggtggtaagatggacgctccgctggtcgttaccacg
cgcttagacccgagggaagttgacagtgaagtccataacatggatgttgtgcgctattac
cccttagagttctatgaagcaacctacgagctcaaatctccaaaggaagttaaagttata
gagcgcgttgaagataggcttggaaaacctgagatgtacgagggcattaagttcacccat
gacagtgatgacattgctttaggtcctaagctaagcatgtacaaacagttgggagatatg
gaggagaaagttagactccagcttgaagtagctagaaagattcgtgctgttgacgagcac
cacgttgctgagacgataattaactcccatttaatccctgatttgaggggtaacctgagg
agcttcacgagacagacgtttaggtgcgtcaagtgcaacacgaaatataggaggcctcct
ctaaatggtaagtgtcctaagtgcggtggaaagatagtcctgacggtatcaaaaggagca
attgagaagtatctatcgaccgcgaaaatgctcgttactgagtttaaggttcttgattac
acaagacagaggatatgcataaccgagaaggacatagacacgctgttcacaaacgtcttt
ccaaaagttcaaacgttattgccaattggaacttccgacgatgtttgtcagaagatggtg
ctcacaaggaaaggagttttgagagagaagcctaaaaagaatgggaacggcaaatcttgg
aatccaagcaatgactttaaaaagcacttaaaaaaggccggtaggcctgagaaggaagag
cctaggaaagagacgccaaagctgaaggaaaagaagcctaagagaaagaaggtaattgga
ttggatgagttttttgggactaaatag

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