Palaeococcus pacificus: PAP_00020
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Entry
PAP_00020 CDS
T03210
Name
(GenBank) DNA polymerase II large subunit
KO
K02322
DNA polymerase II large subunit [EC:
2.7.7.7
]
Organism
ppac
Palaeococcus pacificus
Pathway
ppac03030
DNA replication
Brite
KEGG Orthology (KO) [BR:
ppac00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PAP_00020
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ppac03032
]
PAP_00020
Enzymes [BR:
ppac01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
PAP_00020
DNA replication proteins [BR:
ppac03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (archaeal)
D-family DNA polymerases
PAP_00020
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PolC_DP2_cat
PolC_DP2_N
PolC_DP2_central
LAGLIDADG_3
Intein_splicing
Ribosomal_aS21
zf-DPOE
CHP02642
Zn_ribbon_3
DUF7129
DZR
Motif
Other DBs
NCBI-ProteinID:
AIF68456
UniProt:
A0A075LQQ3
LinkDB
All DBs
Position
3796..9042
Genome browser
AA seq
1748 aa
AA seq
DB search
MSELYSENMKAYFEMLQREIDKAYEVAQKAREQGKDPMREIEVPQATDMAGRVESLVGPK
GVAERIRALAKEYGKELASLKIVDEIIEGKFGDLGSEEKIAEQAVRTALAVLTEGIVSAP
LEGIAYVKIRENPDGSKYLALYYAGPIRSSGGTAQALSVLVGDYVRKKLGLDGYKPTHEE
IERYVEEVDLYHRAVTRLQYHPSADEVRLAIKNIPVEITGEATDQVEVSGYRNLPRVETN
QLRGGAILVLAEGVLQKAKKLLKYIDKLNVEGWEWLKEFVESKESGKKSEAVKSEPLEEA
KEEISVKVEKGFYYGLYETFREKIAPNKKYTKEIIGGRPLFAEPSTNGGFRLRYGRSRTS
GFATWSIHPATMLLVDEFLAVGTQMKTERPGKGCIVTPATTVEGPIVKLKDGSVLRIENY
ETALKVKDDVDEILYLGDVLVNFGDFVENNQTLLPANYAEEWWIQELVKAVEEIYEVKLE
PFAENDEDALEEAADYLDLEKEFLAKLLYDPLRVRPKVEEAIHLSRVLGIPLHPYYTLYW
NTISVEELIRLQEALVNAQIEWDDFRGIKFAKRVLIGEFSVKRALELLGLPHYIDDGFIV
VDYPWSAALLVPLLNLEKKLTPKEFYTPIDLINEVSSIKLRDKGISWIGARMGRPEKAKE
RKMKPPVHVLFPIGLAGGSSRDIYKAYEEGKSTTVEIAHFKCPECGHVDIFPTCPRCNSK
TEHLYTCPKCGHSSTEEKVCPNCRIDMRPYARYSFKVSDYLVPAMRNVRVNTLDKLKGVL
GMSSAFKLAEPLEKGILRAKNDVYVFKDGTIRFDATDAPITHFRPREVGVSVEKLRELGY
THDFEGKPLVSEDQILELKVQDVILPKTAGEYLVRVANFIDDLLEKFYGLERFYNAEKME
DLVGHLVIGLAPHTSAGIIGRIVGFVDALVGYAHPYYHAAKRRNCFPGDTRILVNIDRMP
MRITLKELYELYEGENYENMVYVKRKPKKDIKVYSFDVESGRVVLTDIEDVIKAPSTDHL
IKFELETGRSFETTVDHPVLVYENGEFKEKRAFEVKEGDFILVPKIDFEEPNIEEIDLLE
EFAKFEELQDVIMVRGIAEWLEGIISKEQAKELYDYIRRDSIPLSTLKKILQEKSLSIKD
VPCGAYFGVKRDRVRIRRFVPIKPLLKLIGYYLAEGYARESNSVYQISFSNGDKETREDI
KRALREAFGDGFGIYERGEKITVGSRIIYLLFTRVLKAGSGARDKRVPSFVFKLPREKVR
HLLRAYFEGDGSAIKTAARVVVYSVNKPLLEDIETLLLSKFGIRGYYTMDKNANRGNARG
RLYHIERGNEPPISKVYALNIAGEYYDQFFGEIGFTSERKNSVYDLHKNRNRIKDKYFTE
NGWLLKVKRVEYIKPEEEFVFSLNAKKYHNVIINENIVTHQCDGDEDAVMLLLDALLNFS
KYYLPEKRGGKMDAPLVVTTRLDPREVDSEVHNMDVVRYYPLEFYEATYELKSPKEVKVI
ERVEDRLGKPEMYEGIKFTHDSDDIALGPKLSMYKQLGDMEEKVRLQLEVARKIRAVDEH
HVAETIINSHLIPDLRGNLRSFTRQTFRCVKCNTKYRRPPLNGKCPKCGGKIVLTVSKGA
IEKYLSTAKMLVTEFKVLDYTRQRICITEKDIDTLFTNVFPKVQTLLPIGTSDDVCQKMV
LTRKGVLREKPKKNGNGKSWNPSNDFKKHLKKAGRPEKEEPRKETPKLKEKKPKRKKVIG
LDEFFGTK
NT seq
5247 nt
NT seq
+upstream
nt +downstream
nt
atgagtgaactctacagtgagaatatgaaagcttattttgagatgctccagagggagatt
gataaggcttatgaagttgctcaaaaggcgcgtgagcagggaaaagaccctatgcgagag
attgaggttcctcaagctaccgatatggcaggacgtgttgaaagcctagttggtcctaaa
ggcgttgctgagaggattagagctttggcaaaggaatacggtaaggagttggcttctctt
aaaatcgttgatgaaatcatagagggcaaattcggcgatttgggaagcgaagagaaaata
gctgagcaagctgtgaggactgctttggctgttctcactgagggcatagtttctgctcca
ctcgaaggtatagcttacgttaaaataagggagaacccggacggcagcaagtacttggcc
ttatactatgctgggcctattaggagtagcggtggaacagctcaagcactgagtgttctc
gttggtgactacgttaggaaaaagcttggcttggatgggtataagccaactcatgaagag
atagagcgctacgttgaggaagtggacttataccacagggcagttacgcgcttgcaatac
cacccttcggcggatgaagttaggttggcgataaagaacattccagtggaaataacgggt
gaagctacggatcaagttgaggtgagcggatataggaacctgcctagagtagaaacgaac
cagcttagaggtggagccatcttagttttggccgaaggtgtgcttcaaaaggccaaaaag
ctcctcaagtacattgacaagcttaatgttgagggatgggagtggctcaaggagtttgtg
gagagtaaggagagtggaaagaaaagcgaagccgtgaagagcgagcctttggaggaagcc
aaggaagagataagtgtcaaagtcgaaaagggcttctactatgggttatatgaaacattt
agggagaaaatcgctccaaataagaagtacacgaaggaaataattgggggaaggcccctc
tttgcggagccttcaacaaacggtggcttccgcttgaggtacgggcgctcaaggacgagc
ggctttgcaacgtggtcaatccatccggcaacaatgctcctcgttgacgagtttttagcg
gtaggaacacaaatgaaaactgagagacctggaaaagggtgtattgtaacaccagccaca
acggttgaaggtcctatagtcaagctcaaagatggaagcgttctccgcattgagaattat
gagactgccttgaaagttaaggatgatgttgatgaaatcctctatttgggggatgtcctc
gtaaacttcggcgacttcgtggagaacaaccaaacccttttgcctgcgaattatgcagag
gagtggtggattcaagagcttgtcaaagccgttgaagagatttatgaagttaaattggag
cctttcgcagaaaacgacgaggatgctttggaagaggcagcggactacttagatttggaa
aaagagtttttagctaaactcctctacgatccgcttagggttaggcccaaggtggaggag
gccattcacctctctcgcgttttggggattcctctccacccttactacactctctattgg
aacacaataagtgttgaagagctcattaggctgcaagaagctttggtgaatgctcaaata
gaatgggatgattttaggggaattaagtttgctaagagggttttgataggtgagttcagt
gttaaaagggcgcttgagcttttaggtctacctcactatatagacgacggctttatagtc
gttgattatccctggagtgctgcgcttttagttcctctcttaaacctcgagaagaagctc
acgccaaaggagttctacactccaatagatttaataaacgaagtcagttcaataaagctc
cgcgataagggcataagctggattggtgcaagaatggggaggcccgagaaggccaaggaa
agaaagatgaaaccgcccgttcacgtgctctttccaataggcttggctggaggaagctcg
agagacatatacaaggcatatgaagaaggcaaatcaacaacggttgagatagcccacttt
aaatgtcccgagtgcggccacgtggacatctttccaacatgtccccgctgtaactccaag
acggagcatctctacacatgtccaaagtgcggccatagctcaacggaagaaaaagtctgc
cctaactgtaggatagacatgaggccctatgctagatactctttcaaggttagcgattac
ctagttccagcaatgaggaacgtgcgcgttaatactcttgataagcttaaaggcgttttg
ggaatgagttcggcatttaagctggccgagccccttgagaagggtattcttagggctaaa
aacgacgtttacgtgttcaaagacggcacgattaggtttgatgctacagatgctccaatc
actcacttccgcccgagggaagttggggttagcgttgaaaaattgagagagctgggctac
acccacgacttcgaagggaagcccttggtgagcgaagaccagattttggagcttaaggtt
caagatgttatactcccaaagactgccggtgagtacttggttagggtagccaactttata
gacgacttgctcgagaagttttacggtcttgagaggttttataatgctgagaagatggag
gacttggttggtcaccttgttataggcttagctccgcatacatcagcaggaataattggg
cgtatagtgggcttcgttgacgctttggttggttacgcccacccgtattaccatgcagcg
aagaggaggaactgcttcccaggagatacgaggattttagttaatatcgaccgcatgcca
atgagaattacgcttaaagaactctacgaactctatgagggtgagaactatgagaacatg
gtttacgttaagagaaagcctaagaaggatattaaggtttattctttcgacgtagagagt
ggaagggttgttttaacggacatcgaggatgttataaaggctccttcaactgaccatcta
ataaaatttgagcttgagacagggaggagctttgaaacgacggttgatcatccggttttg
gtctatgaaaacggcgaattcaaggaaaagagagctttcgaggttaaggaaggcgacttc
atattggtgccaaagattgattttgaagagccgaatatagaggaaattgatctcctggaa
gagtttgccaagtttgaggagcttcaagatgtgataatggttcgtggaattgctgagtgg
cttgaaggaattatctccaaagagcaagctaaagagctctacgattacataaggagagac
tcaattccgctttcaacgctcaagaaaatacttcaagagaaaagcttatcaatcaaggat
gtcccgtgcggggcctactttggagtgaagcgcgatcgcgtgaggattaggcgtttcgtc
cctattaagccgctcttaaagctcattggctactatcttgcggagggctacgcgagggag
agcaacagcgtttatcagataagcttctcaaacggggataaagagactagagaagatatt
aaacgtgcccttagggaagcttttggagatggctttggaatctacgagcgtggggagaaa
ataactgttggctcaaggatcatctatttactgttcactagagttttaaaagctggaagc
ggagctagagataaaagagttccatcctttgtctttaaactcccgagggaaaaggttagg
cacttgcttcgcgcctactttgaaggggatggaagtgctataaaaacagccgctcgtgta
gttgtttatagtgtcaacaagcctctccttgaagatattgagacactactcttgtccaag
tttggtatcaggggatattacaccatggacaagaatgccaacagagggaacgcccgtgga
agactctatcatattgagcgcggaaacgagccgccaatatctaaggtgtatgctctcaac
atagctggtgaatattatgaccagttctttggggagattggcttcactagtgagcgtaag
aactctgtttatgacttacacaagaacagaaatcgcattaaggataagtactttactgaa
aatggatggctccttaaggtcaagcgtgttgaatacattaaaccagaggaagaatttgtg
ttttcattaaatgcaaagaaataccataatgttataattaatgaaaatattgtaacacac
caatgtgacggcgacgaagatgctgtcatgctccttttggacgctctcctcaacttcagc
aaatactatctcccagagaagcgcggtggtaagatggacgctccgctggtcgttaccacg
cgcttagacccgagggaagttgacagtgaagtccataacatggatgttgtgcgctattac
cccttagagttctatgaagcaacctacgagctcaaatctccaaaggaagttaaagttata
gagcgcgttgaagataggcttggaaaacctgagatgtacgagggcattaagttcacccat
gacagtgatgacattgctttaggtcctaagctaagcatgtacaaacagttgggagatatg
gaggagaaagttagactccagcttgaagtagctagaaagattcgtgctgttgacgagcac
cacgttgctgagacgataattaactcccatttaatccctgatttgaggggtaacctgagg
agcttcacgagacagacgtttaggtgcgtcaagtgcaacacgaaatataggaggcctcct
ctaaatggtaagtgtcctaagtgcggtggaaagatagtcctgacggtatcaaaaggagca
attgagaagtatctatcgaccgcgaaaatgctcgttactgagtttaaggttcttgattac
acaagacagaggatatgcataaccgagaaggacatagacacgctgttcacaaacgtcttt
ccaaaagttcaaacgttattgccaattggaacttccgacgatgtttgtcagaagatggtg
ctcacaaggaaaggagttttgagagagaagcctaaaaagaatgggaacggcaaatcttgg
aatccaagcaatgactttaaaaagcacttaaaaaaggccggtaggcctgagaaggaagag
cctaggaaagagacgccaaagctgaaggaaaagaagcctaagagaaagaaggtaattgga
ttggatgagttttttgggactaaatag
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integrated database retrieval system