Palaeococcus pacificus: PAP_02075
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Entry
PAP_02075 CDS
T03210
Name
(GenBank) RNA-binding protein
KO
K12589
exosome complex component RRP42
Organism
ppac
Palaeococcus pacificus
Pathway
ppac03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppac00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PAP_02075
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppac03019
]
PAP_02075
Messenger RNA biogenesis [BR:
ppac03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
PAP_02075
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Cofactors
PAP_02075
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-ProteinID:
AIF68847
UniProt:
A0A075LSB7
LinkDB
All DBs
Position
362380..363189
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AA seq
269 aa
AA seq
DB search
MEIVASIMKDYIMELLKEGKRVDGRGLEDYRSLEIKTNVIKKAEGSAWVRLGDTQVLVGI
KADVGEPFPDLPNMGVITTNVELVPLASPTFEPGPPDERSIELARVVDRGIRESQTIDLE
KLVIVPGKLVRVVFIDIHVLDHDGNLVDACGIGAIAALLSTKLPKIEYNEETGEITKLDE
YEPLPVTKIPIPVSFVKIRDNLLVDPNLEEEQVMDGKLTITTDENGYISAVQKSEGGSFK
LEEIMYAIDVALKRAGEIRQVVLDAIKEE
NT seq
810 nt
NT seq
+upstream
nt +downstream
nt
atggagattgtagcatcaatcatgaaggattatattatggagttgcttaaggaaggaaag
agagtcgatggaagaggcttagaggactacagatcattggagattaagactaatgtaatt
aaaaaagcagaaggttcagcatgggtgagattgggagatacccaagttctcgtaggtata
aaggcggatgttggagagcctttcccagatttgcccaacatgggtgtcataactacaaac
gttgagcttgttccattagcttcaccaacctttgagccaggcccaccagacgagcgctcc
atagagctagcgagggttgttgatagaggaattagagaaagccaaactatagacttagaa
aagctcgtaatagttccagggaagctcgttagggtcgtgttcatagacatccacgtttta
gaccatgacggaaatctagtggatgcatgtggaattggagcaatagcagctctcttgagc
acgaagcttccaaaaatcgagtataatgaggaaacaggagaaataactaaattagatgaa
tatgaaccgctcccagtaacaaaaatcccaattccagtaagcttcgttaagataagggac
aacctcttagttgacccgaacctcgaggaagagcaggttatggatggaaagctaactata
acaacggatgagaatggatacatctctgctgttcagaagagtgagggtggaagcttcaag
ctcgaggaaatcatgtatgctattgacgtcgccctaaagagggcaggcgaaattagacaa
gttgtcctcgatgccattaaagaggagtga
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