Palaeococcus pacificus: PAP_02800
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Entry
PAP_02800 CDS
T03210
Name
(GenBank) tRNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
ppac
Palaeococcus pacificus
Brite
KEGG Orthology (KO) [BR:
ppac00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ppac03016
]
PAP_02800
Enzymes [BR:
ppac01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
PAP_02800
Transfer RNA biogenesis [BR:
ppac03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
PAP_02800
Prokaryotic type
tRNA splicing ligases
PAP_02800
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
AIF68981
UniProt:
A0A075LS64
LinkDB
All DBs
Position
483069..484508
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AA seq
479 aa
AA seq
DB search
MIPLKRIDEIRWEIPKFDKRMRVPGKVYADDLLIQKMRQDRTLEQAANVAMLPGIYKHSI
VMPDGHQGYGFPIGGVAAFDAREGVISPGGVGYDINCGVRLVRTNLKKDEVRPRIKQIID
TLFKNVPSGLGSKGRVRLQWTQLDDVLADGAKWAVDNGYGWNEDLEHLEEGGRMEGANPS
YVSQKAKQRGAPQLGSLGSGNHFLEVQYVDEIYDEEVAKAYGLFKGQVVVMIHTGSRGLG
HQVASDYLRIMEKANRKYNIPWPDRELVSLPFESEEGQRYFSAMKAAANYAWANRQMITH
WVRESFEEVFKQKAEDLEMSIVYDVAHNIAKLEEHEINGKKVKVVVHRKGATRAFPPGHE
SVPKAYRDVGQPVLIPGSMGTASYILAGTEGAMKESFGSTCHGAGRLMSRHAATRTWRGD
RVERELLQRGIYVRAASKRVVAEEAPGAYKSVDNVVNVVHKAGIAKLVARMRPMGVAKG
NT seq
1440 nt
NT seq
+upstream
nt +downstream
nt
atgataccgctgaagagaatcgatgagattaggtgggaaattccaaagtttgacaaaagg
atgagagtccccggaaaggtttatgcggatgatcttttaattcaaaagatgaggcaggac
aggactctggaacaggcagccaatgttgcaatgcttcctggcatttataagcattcaata
gtaatgcctgatggtcatcaaggctacggctttccaattggtggtgtagcggcctttgat
gctagagagggagttataagccctggaggagttggctacgatattaattgtggtgtacgt
ttggttagaacaaacctaaaaaaagatgaagttaggccgagaattaaacaaattatcgat
acactctttaagaatgttccaagtggccttggtagtaagggacgagtaaggcttcaatgg
actcagctggacgatgtcttggcagatggtgcaaagtgggctgttgacaacggctacggt
tggaatgaagacttagaacacctagaagaaggcggaagaatggaaggtgcaaacccaagc
tacgtaagccaaaaggccaagcaaagaggggctccacaattgggctctctaggctcagga
aaccactttttagaagtgcagtatgttgatgaaatctacgatgaggaggtagcaaaggcc
tacggcctctttaagggacaagtagttgtcatgatccacacaggatcaagaggtttgggc
catcaagtggcgagcgactacctcagaataatggagaaggcaaatagaaagtacaacatt
ccatggcctgatagagaattagttagcttaccttttgagagtgaagagggacaacgctac
ttcagcgctatgaaagccgccgctaattatgcttgggccaacagacagatgattactcac
tgggtaagggagagctttgaagaggttttcaagcagaaggcagaagatttggagatgagc
atcgtttacgatgtcgcccacaacatagcaaagcttgaagagcatgagattaacggaaag
aaggtcaaagtcgttgtccatagaaaaggtgctacgagggcttttccacctggacatgag
tccgttccaaaggcctatcgcgatgttggtcagcctgtcttaatacccggctcaatggga
acggcaagctatattttagcaggaactgaaggagctatgaaagagagctttggttcaaca
tgccatggtgccggcaggttgatgagcagacatgccgcaactagaacatggagaggagat
agagttgagagagagctccttcaaaggggaatttacgttagggcggctagcaagagagta
gtggctgaagaagcacccggggcttacaagagtgttgacaacgtcgttaacgtcgtccat
aaagcagggatagccaagctcgttgcaagaatgaggcctatgggtgttgctaagggatga
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