KEGG   Palaeococcus pacificus: PAP_03620
Entry
PAP_03620         CDS       T03210                                 
Name
(GenBank) endonuclease
  KO
K04799  flap endonuclease-1 [EC:3.1.-.-]
Organism
ppac  Palaeococcus pacificus
Pathway
ppac03030  DNA replication
ppac03410  Base excision repair
Brite
KEGG Orthology (KO) [BR:ppac00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    PAP_03620
   03410 Base excision repair
    PAP_03620
   03450 Non-homologous end-joining
    PAP_03620
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:ppac03032]
    PAP_03620
   03400 DNA repair and recombination proteins [BR:ppac03400]
    PAP_03620
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:ppac04147]
    PAP_03620
DNA replication proteins [BR:ppac03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    PAP_03620
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     PAP_03620
DNA repair and recombination proteins [BR:ppac03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     PAP_03620
Exosome [BR:ppac04147]
 Exosomal proteins
  Exosomal proteins of haemopoietic cells  (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
   PAP_03620
SSDB
Motif
Pfam: XPG_I XPG_N PTAC6_N 5_3_exonuc DUF3391
Other DBs
NCBI-ProteinID: AIF69144
UniProt: A0A075LS85
LinkDB
Position
620263..621288
AA seq 341 aa
MGVQIGEIIPRKEIELEKLNGRKIAIDAFNAIYQFLSTIRQRDGTPLMDSQGRITSHLSG
LFYRTINLMESGIKPAYIFDGKPPELKKKELKKRAEAREEAKEKWQAALERGELEEAKKY
AQRASRVNEQLISDAKTLLELMGIPVIQAPSEGEAQAAYMAAKGKVWASASQDYDSLLFG
APRLVRNVTITGRRKLPGKNIYVEVKPELIVLEEVLKTLKLDREKLIEMAILVGTDYNPG
GIKGIGPKKALELVKYKKDVLARYNKESDVDLYEIKEFFLNPPVTDDYKLEWKMPDEEGI
LKFLCDEHDFSEERVKHGLERLRKAVKKGKQRTLESWFMKR
NT seq 1026 nt   +upstreamnt  +downstreamnt
atgggagttcaaattggagagataattccgaggaaagagatagagctcgaaaagctcaac
gggaggaaaatcgcgatagacgctttcaacgctatttatcaattcctatccactattagg
cagagggatggaacgcctttaatggactcgcaggggaggattacttcccacctctcgggc
ttattctacaggacgataaacctaatggaaagtggaattaaacctgcttacatcttcgac
ggaaagccgcccgaacttaagaagaaggagcttaaaaagagagctgaagctagagaggag
gcaaaggaaaagtggcaagctgcccttgaaaggggcgagctggaggaggctaagaaatat
gctcaaagggcttcgcgcgtaaatgagcaactcataagcgatgccaaaaccctcctagaa
cttatgggcatccctgttattcaagcgccgagtgagggagaagcccaagctgcttatatg
gccgctaagggcaaagtctgggcttccgcatctcaagattacgactcactgctcttcggc
gcaccgagactcgtgagaaatgtaaccataaccgggaggaggaaacttcccggaaagaac
atctatgtggaagttaagcctgaattgatagtcttggaggaagtgctcaagaccctaaag
ctcgacagggaaaagctcattgagatggcgattctcgttggcacagactacaaccctggt
ggcataaagggaattgggccgaaaaaggccttagaacttgtgaagtataagaaagatgtt
ctagcgagatacaacaaagagagcgatgttgatttgtatgagataaaagagttcttccta
aatcctccggttaccgatgactacaagctcgagtggaagatgcctgatgaggagggcatc
ttaaagttcctatgcgacgagcacgacttcagcgaggagagagtaaagcacggacttgaa
agactaaggaaggcagtgaaaaaaggaaagcaaaggactttggagagctggtttatgaag
cgctaa

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