Palaeococcus pacificus: PAP_05315
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Entry
PAP_05315 CDS
T03210
Name
(GenBank) hypothetical protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
ppac
Palaeococcus pacificus
Pathway
ppac03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppac00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PAP_05315
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppac03019
]
PAP_05315
03009 Ribosome biogenesis [BR:
ppac03009
]
PAP_05315
Enzymes [BR:
ppac01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PAP_05315
Messenger RNA biogenesis [BR:
ppac03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PAP_05315
Ribosome biogenesis [BR:
ppac03009
]
Prokaryotic type
rRNA helicases
PAP_05315
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_30
CMS1
AAA_22
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
AIF69471
UniProt:
A0A075LTM6
LinkDB
All DBs
Position
complement(948161..949411)
Genome browser
AA seq
416 aa
AA seq
DB search
MSFENLGLSGNTLKAVKRKGFKKPTDIQREVIPRLLNGEKDLIGQSQTGTGKTASFALPL
IELIEEKNRHVQAIVLAPTRELAIQVADEINSLKGKKKLSVLPIYGGQPIGPQIRALERG
VHIVVGTPGRVLDHIERGTLRLENIHYFILDEADRMLDMGFIDDIEEILRYTNENKRVLL
FSATIPREILRLARRYLGEYEVIRTEEESLAPNLVEQEYFEVAPSKKFDLLCSLIGEGFH
GIVFCQTKKETRELSKRLVKLGYRAEALNGDIPQRSRENTLRRFKNKRTKVLVATDVAAR
GIDVNDLTHVINYSLPQNPEDYVHRIGRTGRAGKKGKAVTFIRPGEYRKLRYIEKMAKVT
IRKGKVQNKGVEAVMKREVKKHIRRGSEEYMNMAKELLKENSAEEVVSALLKIAMG
NT seq
1251 nt
NT seq
+upstream
nt +downstream
nt
ttgagttttgaaaatttaggactttcagggaataccctaaaagctgtaaaaaggaagggt
tttaaaaaaccaactgacatccaaagagaagttattccaagacttctaaatggagaaaaa
gacctcattgggcaatctcaaacgggaactggtaaaacagcttcttttgcactcccactc
attgagctgattgaggagaaaaacagacatgtgcaggctatagtattagccccaacgagg
gagcttgcaatccaagttgctgacgagataaactcgctaaagggtaagaaaaagctgagt
gttctcccaatttacggaggtcagccaatagggcctcaaattagggcattggagagaggt
gtgcacattgtagttggcactcctggaagggtgctcgaccacatagagagaggcactttg
agacttgagaacattcattattttattctcgatgaagcagatagaatgctcgatatggga
ttcatcgatgacattgaggagattttgaggtatactaatgagaacaagcgtgttctcctg
ttttctgcgacaataccaagggaaattttaaggttagcacgaagatacctcggcgagtat
gaggttataagaacagaagaagagagcttagcgcccaatttggtcgagcaggagtacttt
gaagttgccccctccaaaaagtttgaccttctctgcagcctcattggggagggctttcat
ggtatagttttctgccagactaaaaaggagacgagggagctttctaaaaggctcgttaaa
ttgggttacagggctgaagctctaaatggcgacattcctcaaaggagcagagaaaacacc
ttgaggcgcttcaaaaacaaaaggactaaagtcctcgtcgctacggacgttgccgcgagg
ggaattgatgttaacgacctgacgcacgtcataaactattccctaccccaaaaccccgag
gactacgtccacaggattggaaggacggggagagcagggaagaaaggtaaagcggtaacg
tttattcgccctggagaatatagaaagctcaggtacatagaaaagatggcaaaagtgacg
attagaaagggcaaagtccagaacaaaggcgttgaagcagtaatgaagagggaagtaaag
aagcacataagaagagggagcgaagaatacatgaatatggctaaagagctgttgaaggaa
aacagtgcggaagaagtcgttagtgctttgttgaagattgctatgggctaa
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