Palaeococcus pacificus: PAP_09060
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Entry
PAP_09060 CDS
T03210
Name
(GenBank) RNA-binding protein
KO
K07573
exosome complex component CSL4
Organism
ppac
Palaeococcus pacificus
Pathway
ppac03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppac00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PAP_09060
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppac03019
]
PAP_09060
Messenger RNA biogenesis [BR:
ppac03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
PAP_09060
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
PAP_09060
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ECR1_N
EXOSC1
S1
Auto_anti-p27
Zn_ribbon_PaaD
Zn_ribbon_IS1595
A2L_zn_ribbon
OB_RRP5_4th
FtrD-like
Trm112p
Zn_Ribbon_TF
YnfU
Motif
Other DBs
NCBI-ProteinID:
AIF70192
UniProt:
A0A075LW03
LinkDB
All DBs
Position
1629157..1629747
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AA seq
196 aa
AA seq
DB search
MEEKKRVKEGEFVLPGDYLGVIEEFLPGEGVIEENGELYAIRPGNIRINLEKMEISIEPA
TDTPPVPKVGDVLLVKVIEVKPQAAIVQILRIEGREDYRDLATSKLAGIHVSQVRNGYVE
DMSNEFRIGDIVRAKVISAEKSPIQLTTREPSLGVVFALCIKCRSPLVRKGNQLICPRCG
SVETRKISTFYRKIKV
NT seq
591 nt
NT seq
+upstream
nt +downstream
nt
gtggaagaaaaaaaacgcgtaaaagaaggagagtttgttctacccggcgattatctcgga
gtcatagaagaatttctgcctggtgagggagttattgaagaaaatggtgagctttacgct
ataagacctggaaatattaggataaacttagagaaaatggaaataagcatcgaacctgcc
accgatacacctccagttccaaaagttggagatgttttgctggtcaaagttatagaggta
aagccccaagcagctatagtccaaatcctgaggatagaaggtagggaagattatagagat
ttagcaacatcaaagctcgctggaattcatgtatctcaagttagaaacggctacgttgag
gatatgagtaatgagtttaggataggcgacatcgtaagagcaaaagtcataagcgctgaa
aaaagcccaatacagttaactacaagagagcccagcttgggggtggtattcgccctgtgc
atcaagtgcaggagtccactggtcagaaaaggaaaccagctgatatgtccaagatgcgga
agtgttgagacaagaaagatctctacattctacaggaaaataaaggtgtag
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