Panthera pardus (leopard): 109252882
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Entry
109252882 CDS
T06062
Symbol
LIG1
Name
(RefSeq) LOW QUALITY PROTEIN: DNA ligase 1
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
ppad
Panthera pardus (leopard)
Pathway
ppad03030
DNA replication
ppad03410
Base excision repair
ppad03420
Nucleotide excision repair
ppad03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ppad00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
109252882 (LIG1)
03410 Base excision repair
109252882 (LIG1)
03420 Nucleotide excision repair
109252882 (LIG1)
03430 Mismatch repair
109252882 (LIG1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ppad03032
]
109252882 (LIG1)
03400 DNA repair and recombination proteins [BR:
ppad03400
]
109252882 (LIG1)
Enzymes [BR:
ppad01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
109252882 (LIG1)
6.5.1.6 DNA ligase (ATP or NAD+)
109252882 (LIG1)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
109252882 (LIG1)
DNA replication proteins [BR:
ppad03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
109252882 (LIG1)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
109252882 (LIG1)
DNA repair and recombination proteins [BR:
ppad03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
109252882 (LIG1)
NER (nucleotide excision repair)
Other NER factors
109252882 (LIG1)
MMR (mismatch excision repair)
Other MMR factors
109252882 (LIG1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
DDR
RNA_ligase
PucR
Motif
Other DBs
NCBI-GeneID:
109252882
NCBI-ProteinID:
XP_019280895
LinkDB
All DBs
Position
Unknown
AA seq
987 aa
AA seq
DB search
MQRSIMSFFHPKKEGKAKKPEKETSSREIEPPPKVALKERNGEVPENDSPVKRPGRKAAR
VLGSEGEEEDEALTPSKGQKPAPGSPQVSPPSPVTFPEGSPPLSNTSPAGLSPTGIPKRR
TARKQLPKRPIQDILEEQNEDEDREAKRKKEEAETPTESLTEPELAQKEEAEGDRPTTPA
EHLETSPAEPPTDSTSEPEVAGKQEAREGDQAKPPPRAPKTVSSFFAPRKPATKKEGKEE
GPGAPRKEEAKGPLDPPGYNPAKNNYHPVDDACWKPGQKVPYLAVARTFEKIEEVSARXS
RLTPRPPLSNLLRSVVALSPPDLLPILYLSLNRLGPPQQGLELGVGDGVLLKAVAQATGR
QLESVKAEAAEKGDMGLVAENSRSTQRLMLPPPALTAAGVFAKFRDIAGLAGSASTAKKI
DVIKGLFVACRHSEARFIARALSGRLRLGLAEQSVLAALAQAVSLTPPGQDFPPAVVDAG
KGRTVEARKTWLEEQGMILKQTFCEVPDLDRIIPVLLEHGLKHLPEHCRLSPGVPLKPML
AHPTRGVSEILKRFEEAAFTCEYKYDGQRAQIHVLEGGEVKIFSRNQEDNTGKYPDIISR
IPKIKLPSVTSFILDTEAVAWDREKKQIQPFQMLTTRKRKEVDAADIQVQVCLYAFDLIY
LNGESLVREPLSRRRQLLRENFVQTEGEFVFATSLDTKDTDQIAEFLEQSVKDSCEGLMV
KTLDVDATYEIAKRSHNWLKVSRPGCPSQVWKSCLPGFRSTPHPVRHQGAFPRSPLPPST
AIFYVRFEAGCLATFAGSEFCFGCAEIGEDIRLWGRFESQLGRPTGWVMGPPPPSPLLPP
LVGDEPRGGRFCRGARVGPERIPAGLDPRPSLPPTHCCSPQALVLPTPRSYVRADGAVAP
DHWLDPSAVWEVKCADLSLSPIYPAARGLVDSEKGISLRFPRFIRVREDKKPEEATTSAQ
VASLFKKQSQIQNQQGADLDSDLEDFY
NT seq
2964 nt
NT seq
+upstream
nt +downstream
nt
atgcagcggagtatcatgtcatttttccaccccaagaaggagggcaaagcgaaaaagccg
gagaaagagacctccagcagagagatagagccacctccaaaggtggcgctgaaggaacgg
aacggagaggtgcctgagaacgattctccggtgaagaggccagggcggaaggcggcccgg
gtcctgggcagtgaaggggaggaggaggacgaagccctcacgccctccaaaggccagaag
ccggccccaggctctccacaggtctcccctcccagccctgtcacatttcccgagggcagc
cctcccctctccaacacctctcctgcgggcctctccccaacggggatcccgaagcggcgc
acagctcggaagcagcttcctaaacggccgattcaggatatcctggaagaacagaacgag
gatgaggacagagaggcaaagaggaagaaggaagaagcagagaccccaacagaaagcctc
acagagcctgaattggcccaaaaggaggaagcagaaggggaccggcccacgacgcccgct
gagcacttagagacctccccagccgagcccccgacagacagcacctcagagcctgaggtg
gccggaaagcaggaagcacgggagggggaccaggctaagcctccccccagagctcccaag
acggtcagcagtttcttcgctccccggaagccggcgaccaagaaagaagggaaagaagag
ggacctggcgcccctagaaaggaggaggccaaaggacccctggacccccccggctacaat
ccggccaagaacaactaccatcccgttgacgacgcctgctggaagccgggccagaaggtc
ccttacctggctgtggcccggacatttgagaagattgaggaggtttctgctcggtaatct
cggctcacaccccgtcccccnctgagcaacttgctgcgctccgtggtggccctgtccccc
ccagacctgctccccatcctctacctcagcctcaaccgcctcgggccgccccagcagggc
ctggagcttggcgtcggggacggtgtcctcctcaaggcggtggcccaggccacggggcgg
cagctggagtccgtcaaggccgaggcggccgagaagggcgacatggggctggtggccgag
aacagccgcagcacccagagactcatgctgcccccacccgctctcacggccgccggcgtc
ttcgccaagttccgagacatcgccgggctcgccggcagcgcttccacagccaagaagatc
gacgtcatcaaaggcctctttgtcgcctgccgacactcagaagcccgattcatcgccaga
gccctgagcggacggctacgcctcgggctggcagagcagtcggtgctggccgccctcgcc
caggccgtgagccttacgccccccggccaagatttccccccggctgttgtggacgctggg
aagggccggacagtggaggcccggaagacgtggctggaggaacagggcatgatcctgaag
cagacgttctgcgaggtgcccgacctggaccggatcatccctgtgctgctggagcacggc
ctgaagcacctcccggagcactgcaggctgagcccaggggtccccctgaaaccgatgctg
gcacaccccacccgcggtgtcagcgagatcctgaaacgctttgaggaggcggctttcacc
tgcgagtacaaatacgacgggcagagggcacagatccatgtcctggaaggcggggaggta
aagatcttcagcaggaatcaggaagacaataccggaaagtacccggacatcatcagccgc
atccccaagattaaactgccgtcagtcacgtccttcatcctggacacggaagccgtggcc
tgggaccgggaaaagaagcagatccagccgttccaaatgctcaccacccgcaaacgcaag
gaggtggacgcagcagacatccaggtccaggtttgtctgtatgccttcgacctcatctac
ctcaatggagagtccctggtacgcgagcccctttcccggcgccgacagctgctccgggag
aacttcgtgcagacggagggcgagttcgtcttcgccacctctctggacaccaaggacaca
gaccagatcgctgagttcttggagcagtccgtgaaagactcctgcgaggggctgatggtg
aagactctggacgtcgacgccacctacgagatcgccaagagatcacacaactggctcaag
gtgagccgccccggctgcccttcccaagtctggaaatcttgcctcccaggtttccgatcc
acaccgcaccctgttaggcaccaaggcgcctttcctcggtccccgctgcctcccagcacc
gcaattttctacgtgcggtttgaagccggctgtctggctacattcgcgggcagcgagttc
tgctttggctgtgctgagattggagaggacatccggttgtggggccggttcgagtcccag
ctcggccggccgacgggatgggtcatggggcctccaccaccttccccgctcctgcccccg
ctggtgggggatgagccgcggggcgggcgcttctgcaggggtgcccgagttggccctgag
cggatccctgcggggctggatccaagaccctctcttcctcccacccactgctgttcccca
caggccctggtgctgcccaccccacgctcctacgtccgggccgacggcgccgtggccccc
gatcactggctggaccccagcgccgtgtgggaggtgaaatgcgccgatctgtccctgtcc
cccatctaccccgctgcccggggcctggtggatagcgagaaggggatctccctccgtttc
ccccggtttattcgcgtccgcgaagacaagaagccggaggaggctaccaccagtgcccag
gtggcctctctgtttaagaagcagagtcagattcagaaccagcagggcgcggacttagac
tccgacctggaagatttctactag
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