KEGG   Panthera pardus (leopard): 109260530
Entry
109260530         CDS       T06062                                 
Symbol
DDX39B
Name
(RefSeq) spliceosome RNA helicase DDX39B
  KO
K12812  ATP-dependent RNA helicase UAP56/SUB2 [EC:5.6.2.7]
Organism
ppad  Panthera pardus (leopard)
Pathway
ppad03013  Nucleocytoplasmic transport
ppad03015  mRNA surveillance pathway
ppad03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:ppad00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    109260530 (DDX39B)
  09122 Translation
   03013 Nucleocytoplasmic transport
    109260530 (DDX39B)
   03015 mRNA surveillance pathway
    109260530 (DDX39B)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ppad03019]
    109260530 (DDX39B)
   03041 Spliceosome [BR:ppad03041]
    109260530 (DDX39B)
Enzymes [BR:ppad01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     109260530 (DDX39B)
Messenger RNA biogenesis [BR:ppad03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     109260530 (DDX39B)
Spliceosome [BR:ppad03041]
 Complex C
  Other components
   EJC/TREX
    109260530 (DDX39B)
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    109260530 (DDX39B)
SSDB
Motif
Pfam: DEAD Helicase_C ResIII CMS1 Cas3-like_C_2
Other DBs
NCBI-GeneID: 109260530
NCBI-ProteinID: XP_019294357
Ensembl: ENSPPRG00000001913
UniProt: A0A9V1F374
LinkDB
Position
Unknown
AA seq 428 aa
MAENDVDNELLDYEEDEVETAAGGDGAEAPAKKDVKGSYVSIHSSGFRDFLLKPELLRAI
VDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMC
HTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALA
RNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCR
KFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRC
IALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAF
NYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDEIDI
SSYIEQTR
NT seq 1287 nt   +upstreamnt  +downstreamnt
atggcagagaacgatgtggacaatgagctcttggactatgaagaagatgaggtggagaca
gcagcagggggagacggggctgaggcccctgccaagaaggatgtcaagggctcctatgtc
tccatccacagctctggctttcgtgacttcctactgaagccagagttgctccgggccatt
gttgactgtggctttgagcatccgtcagaagtccagcatgagtgcatccctcaggccatt
ttgggaatggatgttctatgccaggccaagtcaggcatgggaaagacagcagtgtttgtg
ctggccacactgcaacagctggagccggttactggacaggtgtctgtgctggtgatgtgt
catactcgggagttggcttttcagatcagcaaggagtatgagcgcttctctaaatacatg
cccaatgtcaaggtcgcggtgttttttggtggtctgtctatcaagaaggatgaagaggtg
ctgaagaagaactgcccgcatatcgtcgtggggacccctggccgcatcctagccctggct
cgaaataagagcctcaatctcaaacacattaaacactttatcttggatgaatgtgataag
atgcttgaacagctcgacatgcgtcgggatgtccaggaaatttttcgcatgaccccccat
gagaagcaggtcatgatgttcagtgctaccttgagcaaagagatccgtccagtctgccgc
aagttcatgcaagacccaatggagatcttcgtggatgatgagacgaagctgacgctgcat
gggttgcagcagtactacgtgaaactgaaggacaacgagaagaaccggaagctctttgac
cttctcgatgtccttgagttcaatcaggtggtgatctttgtgaagtctgtgcagcgttgc
attgccctggcccagcttctagtggagcagaacttcccagccattgccatccaccgaggg
atgccccaggaggagaggctttctcggtatcagcagtttaaagattttcaacgacgaatt
cttgtggccaccaacctatttggccgaggcatggacattgaacgggtgaacattgccttc
aactatgacatgcctgaggattctgacacctacctgcatcgggtggcccgagcaggccgg
tttggcaccaagggcttggccatcacgtttgtgtcagatgaaaacgatgccaagatcctc
aatgacgtgcaggatcgctttgaagtcaatattagtgagctgcctgatgagatagacatt
tcctcctacattgaacagacgcggtag

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