KEGG   Pseudomonas palleroniana: LDL65_01380
Entry
LDL65_01380       CDS       T09728                                 
Symbol
uvrB
Name
(GenBank) excinuclease ABC subunit UvrB
  KO
K03702  excinuclease ABC subunit B
Organism
ppae  Pseudomonas palleroniana
Pathway
ppae03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:ppae00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    LDL65_01380 (uvrB)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:ppae03400]
    LDL65_01380 (uvrB)
DNA repair and recombination proteins [BR:ppae03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     LDL65_01380 (uvrB)
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      LDL65_01380 (uvrB)
SSDB
Motif
Pfam: UvrB_inter UvrB_3rd UvrB Helicase_C ResIII UVR DEAD AAA_22 AAA_30 HAMP Cauli_AT
Other DBs
NCBI-ProteinID: UOP11239
LinkDB
Position
complement(298693..300708)
AA seq 671 aa
MSDFQLVTRFEPAGDQPEAIRQMVEGIEAGLAHQTLLGVTGSGKTFSIANVIAQLNRPTL
VLAPNKTLAAQLYGEFKAFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINDHIEQ
MRLSATKALLERKDAIIVTTVSCIYGLGSPETYLKMVLHVDRGDKLDQRELLRRLASLQY
TRNDMDFARATFRVRGDVIDIYPAESDLEAIRIELFDDEVESLSAFDPLTGEVIRKLPRF
TFYPKSHYVTPRETLMGAIEGIKVELAERLEYLRANNKLVEAQRLEQRTRFDLEMILELG
YCNGIENYSRYLSGREAGAPPPTLYDYLPPDALLVIDESHVSVPQVGAMYKGDRSRKETL
VEYGFRLPSALDNRPMRFDEWEAISPQTIFVSATPGNYEAEHAGRVIEQVVRPTGLVDPQ
VEIRPALTQVDDLLSEINKRVAVEERVLVTTLTKRMAEDLTDYLADHGVRVRYLHSDIDT
VERVEIIRDLRLGTFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA
ARNLNGRAILYADRMTGSMERAIGETERRRDKQIAFNLANGITPKGVFKDVADIMEGATV
PGSRSKKRKGMAKAAEESAKYENELRSPSEITKRIRQLEEKMYQLARDLEFEAAAQTRDE
IGKLRERLLAV
NT seq 2016 nt   +upstreamnt  +downstreamnt
atgtcggatttccaactcgtcacccgctttgaacccgccggcgatcagccggaagccatt
cgccagatggtcgagggtatcgaggccggcctggcgcaccagacgctgctcggggtaacc
ggttcgggcaagaccttcagcatcgccaacgtcatcgcccagctcaatcgcccgaccttg
gtgctggcaccgaacaagaccctggccgcgcagttgtacggcgagttcaaggcattcttc
ccgaacaatgcggtggagtacttcgtttcctactacgactactaccagcccgaggcctac
gtaccgtcgtccgacacctttatcgaaaaggatgcgtcgatcaacgaccacatcgaacag
atgcggctgtcggcgaccaaggcgttgctcgagcgcaaggacgcgatcatcgtcaccacg
gtgtcgtgcatctatggcctgggcagcccggaaacctatttgaagatggtgctgcacgtc
gaccgcggcgacaaactcgaccagcgcgaactgctgcgccgcctggccagcttgcagtac
acccgtaacgatatggactttgcccgcgccacattccgcgtgcgtggcgacgtgatcgac
atctacccggccgaatccgacctggaagcgatccgcatcgagctgtttgacgatgaagtc
gagagcctgtcggctttcgacccgttgaccggcgaggtgatccgcaagttgccgcgcttt
accttctatccgaaaagccactacgtgacgccccgtgaaaccctgatgggcgccatcgag
gggatcaaggtggagctggctgagcgcctggaatacttgcgcgccaataacaagctggta
gaggcccagcgcctggagcagcgcacccgcttcgacctggagatgatcctggagctgggc
tactgcaacgggatcgaaaactactcgcgctacttgtcgggccgcgaagccggtgcgccg
ccgccgaccctctacgattatctgccgcccgacgctttgctggtgatcgacgagtcccac
gtcagcgtgccgcaggtcggcgccatgtataagggcgaccgttcgcgtaaagaaacgctg
gtggaatacggcttccgcctgccttcggcgctggataaccggccgatgcgctttgatgaa
tgggaagccatcagcccgcagaccattttcgtctccgcaacgccgggcaactacgaagcc
gagcatgccggacgcgtgatcgaacaggtggtcaggccgacgggcctggtcgacccgcag
gtagaaatccgcccggcgttgacccaggtggacgacctgctgtcggaaatcaacaagcgc
gtggccgtggaggagcgggtgctggtgaccacgctgaccaagcgcatggccgaagacctc
accgactacctggccgaccacggcgtgcgcgtgcgctacctgcactcggacatcgacacc
gtggagcgcgtggaaatcatccgcgacctgcgcctgggcacctttgatgtgctggtgggc
atcaacctgttgcgtgaaggcctggatatgccggaagtgtcactggtggcgatcctggat
gcggacaaggagggcttcctgcgatcggagcgctcgttgatccagaccattggccgagct
gcgcgtaacctcaatgggcgtgcgattctctacgccgaccgcatgacgggctccatggag
cgggcgattggcgagaccgagcggcgtcgcgacaagcagattgccttcaacctcgccaat
ggcattacgcccaagggcgtgttcaaggacgtcgccgatatcatggaaggcgccactgta
cccggctcgcgcagcaagaaacgcaaggggatggccaaggcggccgaggagagcgccaag
tacgagaacgaactgcgttcgccgagtgagatcaccaagcgtattcggcagttggaagag
aagatgtaccaattggcgcgggatctggagtttgaggcggcggcgcagacacgcgatgag
attggcaagttgcgtgagcggctgctcgctgtctga

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