Pseudomonas palleroniana: LDL65_05265
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Entry
LDL65_05265 CDS
T09728
Symbol
sbcB
Name
(GenBank) exodeoxyribonuclease I
KO
K01141
exodeoxyribonuclease I [EC:
3.1.11.1
]
Organism
ppae
Pseudomonas palleroniana
Pathway
ppae03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ppae00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
LDL65_05265 (sbcB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ppae03400
]
LDL65_05265 (sbcB)
Enzymes [BR:
ppae01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.1 exodeoxyribonuclease I
LDL65_05265 (sbcB)
DNA repair and recombination proteins [BR:
ppae03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA exonucleases
LDL65_05265 (sbcB)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
LDL65_05265 (sbcB)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
LDL65_05265 (sbcB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exonuc_X-T_C
RNase_T
Motif
Other DBs
NCBI-ProteinID:
UOP11964
LinkDB
All DBs
Position
complement(1123750..1125177)
Genome browser
AA seq
475 aa
AA seq
DB search
MTSIFWYDYETTGINPRSDRPLQVAGIRTDLELNEIGPPLNLYCQPSDDILPHPAACAIT
GITPGVLAEKGLAEADFMTRVHTELAAPGTCGAGYNTLRFDDEMTRYSLYRNFFDPYARE
WQGGNSRWDLIDVVRTAYALRPEGIVWPEQDGRVTLKLERLTQANGIDHGQAHDALSDVR
ATIALARLVREKQPKLYEWLFQLRSKQRVMDQVRLLQPMVHISGRFSAERHYVGVVLPLA
WHPRNRNALIVCDLGLDPQALLDLDADVLRQRLYTRRDDLKEGELPVPLKLLHINRCPVV
APLNVLRAQDRERLQLDMDTCQARALRLTDAQEVWRDKLAAIYSEEDFAPSADPEQQLYD
GFIGDRDRRLCEQVRAAEPAQLARQQWPFDDHRLPELLFRYRARNFPETLDRDEQQRWKL
FCQQRLSNPQWGAPNTLLAFKQACEELAVSATPFQCQVLGQWQEYADSLAARLNS
NT seq
1428 nt
NT seq
+upstream
nt +downstream
nt
gtgacctccattttctggtacgactatgaaaccaccggcatcaacccgcgcagcgatcgt
ccgctccaggtggccggcattcgtaccgacctcgaactcaacgagatcggcccgccgctc
aatctttattgtcagcccagcgacgatatcctgccccatccggcggcatgcgcgatcacg
ggtattactccgggcgtactggcggagaagggcttggccgaagccgatttcatgacacgg
gtgcataccgagctggctgcgcccggtacgtgcggtgccggctataacaccctgcggttc
gacgatgaaatgacgcgctacagcttgtatcgaaattttttcgacccttacgcacgcgag
tggcaggggggtaacagtcgctgggatctgattgatgtggttcgcaccgcctacgccctg
cgtcccgaggggattgtctggccggagcaggatgggcgggtcaccctcaagcttgagcgg
ctgacccaggccaatggtatcgatcacgggcaggcccacgatgcgctgtccgatgtgcgt
gcgaccatcgccttggcgcggttggttcgagaaaaacagcccaagctgtacgaatggctg
tttcaattgcgcagtaagcagcgggtgatggaccaggtgcgtctgttgcaaccgatggtg
catatctccgggcgcttttccgccgagcgccactacgtgggggtggtgctgccgctggcc
tggcacccgcgcaatcgcaatgcattgatcgtctgtgaccttgggctcgacccccaggcc
ttgctggacctggatgccgatgtgttgcgtcagcgcctctatacgcgccgtgatgacttg
aaggaaggtgagctaccggttccgctcaagttgttgcatatcaaccgttgcccggtcgtt
gctccactgaatgtattgcgggcgcaggatcgtgagcggcttcagttggatatggacacc
tgtcaggcgcgggcgctgcgactaactgacgcacaggaagtttggcgtgacaagttggcc
gccatttacagcgaggaggattttgcaccgagtgccgacccggagcagcagctctacgat
ggttttattggcgaccgcgatcgccgcttatgtgaacaagtccgtgcggcagagcctgca
caactagcacgccagcagtggcctttcgatgatcatcgtttgccggaattattatttcgc
taccgtgcccgtaactttcctgaaaccctggacagggacgagcaacaacgttggaaactt
ttctgtcagcagcgtttgtcaaatccgcaatggggggcacccaatactctgctggcattt
aaacaggcgtgcgaggagttggctgttagtgctacaccgtttcagtgccaggtactgggc
caatggcaggagtatgccgattcgctggcagcgcgtttgaactcgtag
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