Pseudomonas palleroniana: LDL65_06570
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Entry
LDL65_06570 CDS
T09728
Symbol
recD
Name
(GenBank) exodeoxyribonuclease V subunit alpha
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
ppae
Pseudomonas palleroniana
Pathway
ppae03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ppae00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
LDL65_06570 (recD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ppae03400
]
LDL65_06570 (recD)
Enzymes [BR:
ppae01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
LDL65_06570 (recD)
DNA repair and recombination proteins [BR:
ppae03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
LDL65_06570 (recD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_19
RecD_N
AAA_30
UvrD_C_2
AAA_11
SH3_13
Viral_helicase1
Helicase_RecD
AAA_22
UvrD-helicase
AAA_16
SLFN-g3_helicase
AAA_17
AAA_28
T2SSE
NACHT
NTPase_1
AAA_25
AAA_5
nSTAND3
Motif
Other DBs
NCBI-ProteinID:
UOP12215
LinkDB
All DBs
Position
complement(1399732..1401792)
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AA seq
686 aa
AA seq
DB search
MSLSPKPLEALKPLERATDLVQLLDRWVERGWLRALDKAFVGFLHELDPQADPLVLLAAA
LTSHQLGHGHVCLDLFETLKAPDFALSLPPEGDVQTGAMLLPSQLLDGLDGAHWCHALAA
SQLVALAVDGSEAAHSRPLVLSGTRLYLRRYWTYERRIDMALRLRLATQESHAADLPQRL
DRLFDQPPPDGVIDWQKLACALATRGAFSIVTGGPGTGKTTTVVRLLALLQAPAVEAGNP
LRIRLAAPTGKAAARLTESISQQVLSLNVPDSVREKIPTQVTTVHRLLGSRPGTRHFRHH
LGNPLPLDVLVVDEASMIDLEMMANLLDALAPHARLVLLGDKDQLASVEAGAVLGDLCRD
AEAGWYSAETREWLQAVSGEDLGKSGLQEDVDGSHPLAQQVVMLRYSRRFGEGSGIGQMA
RWVNQQNAEEARKLLAARTHADLFCLRLKGEHDHALERLVLDGQGDEAQGYRYYLNLLRS
ARPALDTPREAPAWTLWAQQLLQAFDAFQLLCAVRKGPWGVEGLNLRITAALRKVRLIEG
DDQWYEGRPVLMTRNDYGLGLMNGDIGIALKLPESDGGPQVLRVAFPRNDGQGGVRFVLP
SRLNDVETVYAMTVHKSQGSEFTHTALILPDTLNPVLTKELIYTGITRAKRWFSLIEPRG
GVFEEAVRRKVKRLSGLMLELDAGTE
NT seq
2061 nt
NT seq
+upstream
nt +downstream
nt
atgagcctgtcgcccaagccgcttgaggcactgaaaccgctcgaacgcgccaccgacctg
gtgcaactcctcgatcgttgggtagagcgtggctggttgcgagccctggacaaagcgttt
gttggtttcctgcacgaactcgacccacaggccgaccctctggtactgctggcggcagcg
ttgaccagccatcaactgggccacgggcacgtatgcctcgacctgttcgaaaccctcaag
gcgccggactttgccctgtcattaccgcccgaaggcgacgtgcaaaccggcgccatgctg
ctgccgtcgcaattgctggatggccttgacggcgcgcactggtgccatgcactggccgcc
agccagttggtggcgttggcggtggatggcagtgaggctgcccacagtcgcccgctggtc
ctgtccggcactcgcttgtacctgcggcgctactggacctacgaacggcgcatcgacatg
gccttgcgcctgcgcctggcaactcaggaaagccacgctgccgatttgccgcaacgcctg
gatcggttgtttgaccaaccccccccggatggcgtgatcgactggcaaaaactcgcctgc
gccctggccactcgtggggctttcagcatcgtcaccggcggccccggcaccggcaagacc
accaccgtggtgcgcttgctcgcgctgttgcaggcaccggccgtcgaggccggcaacccg
ctgcgtatccgcctggcggcgccgaccggtaaagcggctgcgcgcctgaccgaatccatc
agccaacaggtcctgtcgctgaacgtgccggacagcgtgcgggaaaaaatcccgactcag
gtcaccaccgttcaccgcctgctgggcagtcgtccgggcacgcggcactttcgtcaccac
cttggcaacccgctgcccctggatgtgctggtggtcgacgaagcctcgatgatcgacctg
gaaatgatggccaacctgctggacgccttggcaccgcatgcgcgattggtcttgctggga
gataaggatcagctggcttcggtggaggcgggtgcggtgctcggcgatttgtgccgtgat
gccgaagcgggctggtacagcgcagaaacccgtgaatggttgcaagccgtcagcggcgag
gacctgggtaaaagtggcctgcaggaagacgtcgacggcagccatccgttggcccagcaa
gtggttatgctgcgctactcgcgcaggtttggtgaaggcagcggcatcggccagatggca
cgttgggtcaaccagcagaatgctgaggaggcgcgcaaattgctggctgcacgcactcac
gctgacctgttttgcctgcgcctcaagggcgagcacgaccacgccttggagcgcctggta
ctggacgggcagggcgatgaagcccaaggctatcgctattacctcaacctgttgcgcagt
gcccgcccggccctggacaccccccgcgaagcccccgcctggactctctgggcgcaacaa
ctgctgcaagccttcgacgcctttcaactgctctgcgccgtacgcaaaggcccctggggc
gtggaggggctgaacctgcgcatcaccgccgcgctgcgcaaagtgcggctgatcgagggt
gacgaccagtggtatgaaggccgtccggtgctgatgacccgcaacgattacggcctgggc
ttgatgaacggcgatatcggcatcgccctcaaactgccggaaagcgacggcggcccgcag
gtgctgcgcgtggccttcccacgtaacgatggccagggcggtgtgcgctttgtgctgccc
agccgtctgaatgatgtggaaaccgtgtacgccatgaccgtgcataaatcccagggctcg
gagttcacccataccgcgttgatcctgccggatacgctgaacccggtactgaccaaggag
ctgatctacaccggcatcacccgggccaagcgttggttcagcctgatcgagccgcgtggt
ggtgtgttcgaggaagcggtgcgacggaaggtcaagcgcttgagcggactgatgctggag
ctggacgcagggactgaataa
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