Pseudomonas palleroniana: LDL65_08460
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Entry
LDL65_08460 CDS
T09728
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
ppae
Pseudomonas palleroniana
Pathway
ppae02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
ppae00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
LDL65_08460 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ppae03021
]
LDL65_08460 (rpoD)
Transcription machinery [BR:
ppae03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
LDL65_08460 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r1_1
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
TMPIT
Motif
Other DBs
NCBI-ProteinID:
UOP12565
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Position
1793552..1795399
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AA seq
615 aa
AA seq
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MSGKAQQQSRIIELIKLGREQKYLTYAEVNDHLPEDISDPEQVEDIIRMINDMGIPVHES
APDADALMLADADTDEAAAEEAAAALAAVETDIGRTTDPVRMYMREMGTVELLTREGEIE
IAKRIEEGIREVMGAIAHFPGTVDHILSEYNRVTSEGGRLSDVLSGYIDPDDGIAPPAAE
VPPPVDAKVAKADDDSDDDEAESSDDEEEAESGPDPIIAAQRFGAVSDQMEITRKALKKH
GRTNKQAIAELLALAELFMPIKLVPKQFEGLVERVRSALERLRAQERAIMQLCVRDARMP
RADFLRQFPGNEVDESWSDALAKGKAKYAEAIGRVQPDIIRCQQKLTALETETGLTIAEI
KDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDK
FEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREP
TPEELGERMEMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDSTMQSPIDVATVE
SLKEATRDVLSGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKL
RHPTRSEHLRSFLDE
NT seq
1848 nt
NT seq
+upstream
nt +downstream
nt
atgtccggaaaagcgcaacagcagtctcgtattattgagttgatcaaactgggtcgtgag
cagaagtatctgacttacgccgaggtcaacgaccacctgcccgaggatatttcagatcct
gagcaggtggaagacatcatccgcatgattaacgacatggggatccccgtacacgagagt
gctccggatgcggacgcccttatgttggccgacgccgataccgacgaggctgccgctgaa
gaagcggctgccgcgctggctgctgtggagaccgatatcggtcgtaccaccgaccctgtg
cgcatgtatatgcgtgaaatgggtaccgtcgagctgctgacacgcgaaggcgaaatcgaa
atcgccaagcgtatcgaagagggtatccgtgaagtgatgggcgcaatcgcgcacttccct
ggcacggttgaccacattctctccgagtacaaccgcgttaccagcgaaggtggccgcctg
tcggacgtcctgagcggttatatcgacccggacgacggcattgcgccgccggctgccgaa
gtaccgccgcctgtcgatgccaaggttgccaaagcggacgacgactccgacgacgacgaa
gctgaatccagcgacgacgaagaagaagccgaaagcggtccagacccgatcatcgctgcc
cagcgtttcggtgcggtttccgatcaaatggaaatcacccgcaaggccctgaagaagcac
ggtcgcaccaacaagcaggcaattgccgagctgctggcgttggctgagctgttcatgccg
atcaagctggtaccgaagcaattcgaaggcctggttgaacgtgttcgcagtgcacttgag
cgtctgcgtgctcaagaacgcgcaatcatgcaactgtgtgtacgtgatgcacgcatgccg
cgcgccgacttcctgcgccagttcccaggcaacgaagttgacgaaagctggtccgacgcg
ctggccaagggcaaggcgaaatacgctgaagccattggtcgcgtgcaaccggacatcatt
cgctgccagcagaagctgaccgcgcttgagaccgaaaccggcctgaccattgctgaaatc
aaggacatcaaccgtcgcatgtcgatcggtgaggccaaggcccgccgcgcgaagaaagag
atggttgaagcgaacttgcgtctggtgatctcgatcgccaagaagtacaccaaccgcggc
ctgcaattcctcgacctgatccaggaaggcaacatcggcctgatgaaggctgtggacaag
ttcgaataccgtcgcggctacaagttctcgacttatgccacctggtggatccgtcaggcg
atcactcgctcgatcgccgaccaggcccgcaccatccgtattccggtgcacatgatcgag
accatcaacaagctcaaccgcatttcccggcagatgttgcaggaaatgggtcgcgaaccg
accccggaagagctgggcgaacgcatggaaatgcctgaggataaaatccgcaaggtattg
aagatcgctaaagagccgatctccatggaaacgccgattggtgatgacgaagactcccat
ctgggtgacttcatcgaagactcgaccatgcagtcgccaatcgatgtcgccaccgttgag
agcctcaaagaagcgactcgcgacgtactgtccggccttactgcccgtgaagccaaggta
ctgcgcatgcgtttcggcatcgacatgaataccgaccacacccttgaggaagtcggtaag
caatttgacgtgacccgtgagcggatccgtcagatcgaagccaaggcgctgcgcaagctg
cgccacccgacgcgaagcgagcatctgcgctccttcctcgacgagtga
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