Pseudomonas palleroniana: LDL65_09115
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Entry
LDL65_09115 CDS
T09728
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
ppae
Pseudomonas palleroniana
Pathway
ppae03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppae00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LDL65_09115
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppae03019
]
LDL65_09115
Enzymes [BR:
ppae01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LDL65_09115
Messenger RNA biogenesis [BR:
ppae03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LDL65_09115
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
P-loop_SecA
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
UOP12682
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All DBs
Position
1942681..1944558
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AA seq
625 aa
AA seq
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MSFASLGLSEALVRAIEAAGYTEPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL
ERLFPNGHPDKSQRHGPRQPRVLVLTPTRELAAQVHDSFKLYARDLKFVSACIFGGVGMN
PQVQAMSRGVDVLVACPGRLLDLCGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLAR
LPAKRQNLLFSATFSQDITALAGKLLHNPERIEVTPPNTTVERIEQRVFRLAASHKRALL
AHLITAGAWEQVLVFTRTKHGANRLAEYLDKHGLTAVAIHGNKSQNARTKALADFKAGTV
RILVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDEEKL
LKSIERMTKQKIADGDLMGFDASAVEAEKPEARERPDVRNPRNPRGPKGDGPNGGGGGGG
RRDKGKDKGKEKSASNGRGERPAREQKPREGTPAREQRQPSQPPRAAADRAPDEFLDDDI
DNFGNRVDYVPQAKPAQGRGRRPGAPAQGAGAGAPRSGQPQGGRQNGPRNSSGGTAGTPP
AKRNGGRNGASRDGQARREDSRNRRPARDDQPRSSEPAVQNPRGGPAPKIIHKESKADRF
PTPEQLDQLPGRPRGEKPALLTRNR
NT seq
1878 nt
NT seq
+upstream
nt +downstream
nt
atgtcctttgcttccctcggtctctccgaggctttagtccgcgccatcgaggctgcgggc
tataccgagcctactccggtgcaacagcgggccattcccgccgtgttgcaaggtcgcgac
ctgatggttgcggcacagacaggtactggtaaaaccggtggtttcgccctcccgattctg
gagcggttgttccccaacggtcacccagacaaatcccagcgtcacggcccgcgccaaccg
cgcgtactggtcctgaccccaacccgcgaactcgcagcccaggtgcatgacagcttcaag
ctgtatgcccgcgacttgaagttcgtcagtgcctgcatcttcggcggcgtcggcatgaac
ccgcaggttcaggccatgtcccggggtgttgacgtgctggtggcgtgcccgggtcgcttg
ctcgacctgtgcggtcaaggcagcgtcgacttgtcccacgtcgaaatcctcgtactggac
gaagccgaccgcatgctcgacatgggctttgtccatgacgtgaaaaaagtcctcgcccgc
ctgccggccaagcgccagaacctgctgttctcggcgacgttctcccaggacatcaccgcc
ctggccggcaagctgctgcacaacccggagcgcatcgaagtcacgccgccgaacaccacg
gtcgagcgtatcgagcaacgcgtgttccgcctggccgccagccacaagcgtgcattgctg
gcccacctgatcaccgccggcgcctgggaacaggtgctcgtgttcacccgtaccaagcac
ggcgccaaccgcctggccgagtacctggacaaacacggcctcaccgccgtcgccatccac
ggcaacaagagccagaacgcgcgcaccaaggccctggccgacttcaaggccggcaccgta
cgcatcctggttgccaccgacatcgccgcccgaggcctggatatcgaccagttgccgcac
gtggtcaacttcgaactgcctaacgtcgacgaagactatgtgcaccgtatcggccgtacc
ggccgcgccggtcgttcgggtgaagccatttccctggttgcaccggacgaagaaaaactg
ctgaaaagcattgagcgcatgaccaagcagaagatcgccgacggcgacctgatgggcttc
gatgccagcgccgtagaggctgaaaagcctgaagcgcgcgagcgtccggacgtgcgcaac
ccacgcaacccacgcggtcctaagggcgatggcccgaacggcggcggtggtggcggcggg
cgtcgtgacaagggcaaagacaagggcaaggaaaagtccgcgagcaacggccgtggcgaa
cgcccagcccgcgagcagaagccccgcgaaggcaccccggcccgcgaacagcgccagccg
agccagccgccccgcgccgcagccgaccgtgctccggacgagttcctggacgacgatatc
gataacttcggtaaccgtgtcgactacgtgcctcaggccaaaccggcccagggccgtggc
cgccgcccaggtgctccggcacagggcgcaggcgcgggcgctccgcgcagcggccagcct
caaggcggccgccagaacggcccacgcaacagcagcggcggcaccgccggcaccccaccg
gccaagcgcaatggcggacgtaatggcgcatcacgtgacggccaggcccgtcgcgaagat
tcgcgtaaccgccgcccggcccgtgacgaccagcctcgctcgtctgaacctgccgtgcag
aacccgcgtggtggcccggcgccgaagatcatccacaaggagtccaaagccgaccgcttc
ccgacacccgagcagttggatcaactgccaggccgtcctcgtggtgaaaaaccagcgctg
ctgacccgcaaccgctga
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