Pseudomonas palleroniana: LDL65_09975
Help
Entry
LDL65_09975 CDS
T09728
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
ppae
Pseudomonas palleroniana
Pathway
ppae03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppae00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LDL65_09975 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ppae03021
]
LDL65_09975 (rho)
03019 Messenger RNA biogenesis [BR:
ppae03019
]
LDL65_09975 (rho)
Transcription machinery [BR:
ppae03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
LDL65_09975 (rho)
Messenger RNA biogenesis [BR:
ppae03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
LDL65_09975 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
OB_RNB
AAA_25
AAA_22
S1CSD-TOTE-2
NACHT
Spore_III_AA
AAA
Motif
Other DBs
NCBI-ProteinID:
UOP12848
LinkDB
All DBs
Position
complement(2116279..2117538)
Genome browser
AA seq
419 aa
AA seq
DB search
MNLTELKQKPITELLELAEQMGIENMARSRKQDVIFSLLKKHAKSGEEISGDGVLEILQD
GFGFLRSADASYLAGPDDIYVSPSQIRRFNLRTGDTIVGKIRPPKEGERYFALLKVDTIN
FDRPENAKNKILFENLTPLFPTVRMKMEAGNGSTEDLTGRVIDLCAPIGKGQRGLIVAPP
KAGKTIMLQNIAANIARNNPEVHLIVLLIDERPEEVTEMQRTVRGEVVASTFDEPPTRHV
QVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDAHALEKPKRF
FGAARNIEEGGSLTIIATALVETGSKMDEVIYEEFKGTGNMELPLDRRIAEKRVFPAINI
NRSGTRREELLTADDELQRMWILRKLLHPMDEVAAIEFLVDKLKTTKTNDEFFLSMKRK
NT seq
1260 nt
NT seq
+upstream
nt +downstream
nt
atgaatctgactgaactcaagcaaaagccgattaccgaactgctcgaattggccgaacag
atgggcatagaaaatatggcccgttcgcgcaagcaggacgtgattttctccctgctgaaa
aagcacgcgaaaagcggcgaggaaatctccggtgatggcgtgctggagattctccaggac
ggcttcggcttcctccgctctgcagacgcttcctatctcgccggccctgacgatatttat
gtctcgccgagccagatccgtcgcttcaacttgcgtaccggtgacaccatcgttggcaag
atccgtcctccgaaggaaggcgagcgttatttcgccctgctcaaggtcgacacgatcaac
ttcgatcgtcccgagaacgcgaaaaacaagattctcttcgagaacctgaccccgctgttc
ccgactgtgcgcatgaagatggaggccggtaacggctccaccgaagatttgaccggtcgt
gtaatcgacctgtgcgccccgatcggcaaaggccagcgtggtctgatcgtcgcaccgccg
aaggccggtaagaccatcatgctgcagaacattgcagcgaacatcgcacgtaacaatcct
gaagttcacctgatcgtgctgttgatcgatgagcgtccggaagaagtgactgaaatgcag
cgcaccgtgcgcggcgaagtggtcgcctcgacgttcgatgagccgccaacccgccacgtg
caggttgccgaaatggtgatcgagaaggccaagcgcctggttgaacacaagaaagacgtg
gtgatcctgctcgactccatcacccgtctggcccgtgcctacaacactgtgatcccaagc
tccggcaaagtattgaccggtggtgtcgatgcccacgccctggagaaaccgaaacgtttc
ttcggcgctgcgcggaacatcgaagaaggcggctcgctgaccattatcgccaccgcgctg
gttgaaaccggctcgaagatggacgaagtgatctacgaagagttcaagggtaccggcaac
atggaactgcccctggaccgtcgtattgccgagaaacgtgtgttcccggcgatcaacatc
aaccgttccggcacccgccgtgaagagttgctgaccgccgacgacgaactgcaacgcatg
tggattctgcgcaagttgctgcacccgatggacgaagtcgccgccatcgagttcctggtc
gacaagctgaaaaccaccaagaccaacgacgagttcttcttgtcgatgaagcgtaagtaa
DBGET
integrated database retrieval system
