Pseudomonas palleroniana: LDL65_12605
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Entry
LDL65_12605 CDS
T09728
Name
(GenBank) RecQ family ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
ppae
Pseudomonas palleroniana
Pathway
ppae03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppae00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LDL65_12605
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppae03019
]
LDL65_12605
03400 DNA repair and recombination proteins [BR:
ppae03400
]
LDL65_12605
Enzymes [BR:
ppae01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LDL65_12605
Messenger RNA biogenesis [BR:
ppae03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LDL65_12605
DNA repair and recombination proteins [BR:
ppae03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
LDL65_12605
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
DEAD
RecQ_Zn_bind
ResIII
SNF2-rel_dom
Motif
Other DBs
NCBI-ProteinID:
UOP13351
LinkDB
All DBs
Position
2730942..2732879
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AA seq
645 aa
AA seq
DB search
MHDTLQQVFGYPQFRPGQEQTVRAVLAGRSAAAIFPTGSGKSLCYQLSAVLLPHLTLVVS
PLLALMQDQLGFLQRHGISAGSIDSAQSRDEANEVMARARSGELKILMISVERLKNERFR
NFLQSVQISLLVVDEAHCISEWGHNFRPDYLKLPDYQRQFNIPQALLLTATATPKVIADM
QAKFSIAPQDVVTTGFYRPNLNLLVEPVSGPDKRRRLVEWMSERANQPSIVYVTLQKTAE
QIAEHLNRNGIQAEAYHAGLPHDKREGIQQRFMGGRSNCIVATIAFGMGIDKSDIRNVVH
FDLPKSIENYSQEIGRAGRDAQASDCLVLANRDSLNVLENFVYGDTPEQEGILRVLEALQ
AARPEGQWEFLLRSLSEHSNIRELPLKTLLVQLELKGVIAPRYAFYAEYRFKYLVEPEAL
QARFSGERQQFVAAIIEVCKRARTWATVDFDALYQQHNAERNRVVKALDYFQEQGLIELE
SKQMTEVYSLLDTDFDPQALSAELYTGFKQHEVTEVARIHAMLDLFATERCLGQRLAEYF
GDENAPQRCGHCSVCHGRVAHLPPPPSLPPLVDKNFMELCGDFIHRHHALTGQLPGSERL
TRFLGGISVPLFNSLKARGIPGFAALEDYPYAEVREWAEAHLKHL
NT seq
1938 nt
NT seq
+upstream
nt +downstream
nt
atgcacgacaccctccaacaggtcttcggttatccacagttccgcccgggccaggaacaa
acggtcagggccgtgctggccggccgttcggcagccgcgatcttccctacagggtcgggc
aagtccttgtgttaccagctatcggccgtgctgcttccgcatctgacgttggtggtgtcg
ccgttgttggcgttgatgcaggatcaattgggctttctgcagcgtcacgggatttcagcc
ggcagtatcgactcggcccagagccgcgatgaggccaatgaggtaatggcccgtgctcgc
tcgggcgagctgaaaatcctgatgatttccgtggagcgcttgaagaacgagcgttttcgt
aatttcctgcaaagcgtgcagatctctctgctggtggtggacgaggcgcactgtatttcg
gagtggggccataacttccgcccggactatttgaagcttccagactaccaacggcagttc
aatatcccacaggcgctgctgctgacggccacggccacgcctaaggtgattgccgacatg
caggccaagttcagcattgcaccgcaggatgtggtgaccactggtttctaccggcccaac
ctcaatttgctggtggagccggtaagcggccccgacaagcgtcggcgtttggtcgagtgg
atgagcgagcgcgccaaccagccgagcatcgtctatgtcaccctgcagaagaccgccgag
cagattgccgagcacctgaatcgcaatggcatccaggctgaggcctaccatgccggtttg
ccccacgataaacgtgagggcatccagcaacgcttcatgggtggacgctccaattgcatc
gtcgccaccatcgcgtttggcatgggcatcgacaaaagtgatatccgcaatgtggtgcac
ttcgacttgcccaagtccattgagaactacagtcaggaaatcggccgtgccgggcgcgac
gctcaagcctccgactgcctggtactggctaaccgcgacagcctcaacgtgctggaaaat
ttcgtctacggtgatacacccgagcaagagggcattctgcgtgtgctggaggcattgcag
gcggcgcggccagaggggcaatgggagtttttgctgaggtcattgtcggagcacagcaat
atccgcgagttgccgctcaagacgttgctggtgcagttggagctcaagggcgtgattgcg
ccgcgctacgcgttctatgctgaataccgtttcaaatacctggtcgaacctgaggcgttg
caggcaaggttttcgggggagcgacaacagttcgtcgcagcgatcatcgaggtgtgcaag
cgtgcgcgaacctgggcgacggtggattttgacgcgctgtatcagcagcacaacgccgag
cgcaatcgagtggtgaaagccctggattactttcaggagcaaggcttgatcgaactcgag
agcaagcagatgaccgaggtctacagcctgctcgataccgactttgatccacaggccttg
agcgccgagttatacacaggcttcaagcagcacgaggttaccgaggtggcgcggattcac
gccatgctggatctgttcgccaccgaacgctgcctggggcagcgcctggccgaatatttt
ggcgacgaaaacgcacctcaacgttgcgggcactgttcggtatgccacggccgtgtggcg
caccttccgccaccgccaagcttaccgccccttgtggataaaaatttcatggagctgtgc
ggggattttatccacaggcatcatgcattgacgggccaattgcccggctccgagcggttg
acgcggtttctcggtggtatcagcgtgcccttgttcaattcattgaaggcgcggggtatt
ccggggtttgctgcgctggaggattacccttacgccgaagtgcgcgaatgggccgaagcc
catctgaaacacctgtaa
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