Pseudomonas palleroniana: LDL65_13895
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Entry
LDL65_13895 CDS
T09728
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
ppae
Pseudomonas palleroniana
Pathway
ppae03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppae00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LDL65_13895 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppae03019
]
LDL65_13895 (rnr)
03016 Transfer RNA biogenesis [BR:
ppae03016
]
LDL65_13895 (rnr)
Enzymes [BR:
ppae01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
LDL65_13895 (rnr)
Messenger RNA biogenesis [BR:
ppae03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
LDL65_13895 (rnr)
Transfer RNA biogenesis [BR:
ppae03016
]
Prokaryotic type
tRNA degradation factors
LDL65_13895 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
WHD_RNase_R
RNase_II_C_S1
OB_Dis3
Motif
Other DBs
NCBI-ProteinID:
UOP13596
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All DBs
Position
3030532..3033162
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AA seq
876 aa
AA seq
DB search
MADWQSLDPEAAREAEKYENPIPSRELILAHLADRGSPASREQLVEEFGLTTEDQLEALR
RRLRAMERDAQLIYTRRGTYAPVDKLDLILGRIAGHRDGFGFLIPDDGSDDLFMSPAQMR
LVFDGDRALARVSGLDRRGRREGVIVEVVSRAHESIVGRYFEEGGIGFVVPDNPKVQQEV
LITPGRNGAAKVGQFVEVKITHWPTARFQPQGDIVEVVGNYMAPGMEIDVALRTYDIPHV
WPEAVLKEAGKLKPEVEEKDKEKRIDLRHLPFVTIDGEDARDFDDAVYCEAKPGKLRLFS
GGWKLYVAIADVSSYVKIGSALDNEAQVRGNSVYFPERVIPMLPEQLSNGLCSLNPKVDR
LAMVCEMTISKTGEMTDYQFYEAVIHSQARLTYNKVSTILETPKTSEAKALRTEYAGVVP
HLKQLYALYKVLLGARHTRGAIDFETQETRIVFGSERKIAAITPTTRNDAHKLIEECMLA
ANVATAEFLKKHEIPALYRVHDGPPPERLEKLRAFLGELGLSLHKGKDGPTPKDYQALLA
GIKDRPDYHVIQTVMLRSLSQAVYSADNQGHFGLNYEAYTHFTSPIRRYPDLLTHRAIRS
VIHSKQNTPHVKRAGAMTIPKARIYPYDEAALEQLGEQCSMSERRADEATRDVVNWLKCE
FMKDRVGESFPGVITAVTGFGLFVELTDIYVEGLVHVTALPGDYYHFDPVHHRLAGERTG
RSFRLGDTVEVQVMRVDLDERKIDFGMPDKPAESPGSRKKRGGDTPAPASKGKSAPAKAA
EPEPAKAGRRSSSKDKVSEAYRPSDAAAKNAEVRKSRELKQQLLNEAKSGGKPASGGKSR
GPESSSSKTSKHRKGPSKTGSAPAKSSGSRKPKAKS
NT seq
2631 nt
NT seq
+upstream
nt +downstream
nt
atggccgattggcagtccctcgatcccgaggccgctcgtgaagcggaaaaatatgaaaac
cctattcctagccgcgaactgatcctggcgcatctcgccgatcggggttcgcctgctagc
cgcgagcaattggttgaagagttcggtctgaccaccgaagaccaactcgaagcgctgcgc
cgccgcctgcgtgccatggaacgcgacgcacaactgatctacacccgccgtggtacttac
gcgccggtggacaagctcgacctgatcctgggccgtattgccggccaccgtgacggtttc
ggctttctgatcccggatgacggcagcgacgacctgttcatgagcccggcgcaaatgcgt
ctggtattcgatggcgaccgtgccctggcgcgcgtgtccggcctggaccgtcgtggtcgc
cgtgaaggcgtgatcgtcgaggtcgtatcgcgtgcccacgagtccatcgtcggccgttat
ttcgaagaaggcggtatcggcttcgttgtaccggacaacccgaaggttcagcaggaagtg
ctgattaccccgggccgcaatggcgccgccaaggtcggtcagttcgttgaggtgaaaatc
acccactggccaacggcgcgcttccagccgcagggcgatatcgttgaagtggtcggcaac
tacatggcgccgggcatggaaatcgatgtcgcgctgcgtacctacgatattcctcacgtc
tggcctgaggctgtgctcaaggaagccggcaagctcaagcctgaagtggaagaaaaggac
aaagagaaacgcatcgatctgcgccatctgccgttcgtcaccatcgacggcgaagatgcc
cgcgacttcgacgatgcggtctactgcgaagccaagcccggcaagctgcgtctgttctcc
ggcggctggaagttgtacgtggcgattgccgacgtatccagctatgtgaagatcggctcg
gcgctggacaatgaagcccaggtgcgcggcaactcggtgtacttccccgagcgcgtgatc
ccgatgctgcctgagcagctgtccaacggcctgtgctcgctgaatccgaaagtcgaccgt
ttggccatggtgtgcgagatgactatctcgaaaaccggcgaaatgaccgattaccagttc
tacgaagcggtgatccattcccaggcgcgcctgacctacaacaaggtcagcaccatcctg
gaaacaccgaaaaccagcgaagccaaggctttgcgtaccgaatacgctggcgtggtgccg
cacctcaagcagctgtatgcgctgtacaaggtgttgctgggtgcacgtcatacccgtggc
gcgatcgattttgaaacccaggaaacccggattgtcttcggttccgagcgcaagatcgcc
gcgatcaccccgaccacgcgtaacgatgcgcacaagctgatcgaggaatgcatgctggcg
gccaacgtggccaccgccgaattcctgaaaaagcatgaaatccctgcgttgtaccgtgtg
cacgatggcccgccacctgagcgactggaaaaactgcgcgcgttcctcggtgagctaggc
ctgtccctgcataaaggcaaggacggcccgacgccgaaggattaccaggctttgctggcc
ggcatcaaagatcgtccggattaccatgtgatccagaccgtcatgctgcgctcgctgagc
caggcggtgtacagcgccgacaaccaggggcacttcggtctgaattacgaggcgtacacc
cacttcacctcgccgatccgccgttacccggacctgctgacgcaccgggcgatccgcagc
gtgatccactccaagcagaacaccccgcacgtcaagcgcgccggtgcgatgaccattccg
aaggcgcgcatctatccgtacgacgaagcggccctggaacagttgggcgagcagtgctcc
atgagcgagcgtcgtgccgatgaagcgacccgcgacgtggtgaactggctcaagtgcgag
ttcatgaaggatcgcgtgggcgagtcgttccctggcgtgatcacggccgtgaccggtttt
ggtttgttcgtcgagctgaccgacatctacgtcgagggcctggtgcacgtgaccgccttg
ccaggtgactactatcacttcgatcctgtgcatcaccgcctggcgggtgagcgtaccggt
cgcagtttccgtctgggcgacaccgtggaggtgcaggtcatgcgcgtcgacctcgacgag
cgcaagatcgacttcggcatgcccgacaagcccgccgaatcaccgggcagtcgcaaaaaa
cgtgggggtgataccccggcgccagcctccaaaggcaaaagtgctcctgcgaaagccgcc
gagcctgagcccgccaaggcaggccgtcgttcttccagcaaggacaaggtctccgaagcc
taccgcccaagcgatgccgcggctaaaaacgctgaggtacgcaagagtcgcgagttgaag
cagcagttgctcaacgaagccaaaagcggtggtaaaccggcgtcgggcggtaagtcgcgt
gggccggaaagctcgtcgagcaagaccagtaaacatcgtaaaggcccgtccaaaacgggt
tcggctcctgcaaaaagcagtgggtcgcgcaaacctaaggccaagtcatga
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