Pseudomonas palleroniana: LDL65_16290
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Entry
LDL65_16290 CDS
T09728
Symbol
rhlB
Name
(GenBank) ATP-dependent RNA helicase RhlB
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
ppae
Pseudomonas palleroniana
Pathway
ppae03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppae00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LDL65_16290 (rhlB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppae03019
]
LDL65_16290 (rhlB)
Enzymes [BR:
ppae01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LDL65_16290 (rhlB)
Messenger RNA biogenesis [BR:
ppae03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LDL65_16290 (rhlB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Utp25_C
Motif
Other DBs
NCBI-ProteinID:
UOP13818
LinkDB
All DBs
Position
complement(3545588..3547057)
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AA seq
489 aa
AA seq
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MTVLKALKKMFGKSEAEPLAPVSSAPAPTSGSRNDGKQPGRTAPAAQPKKPAVKPAEQAK
PLEATPAPVAPKPRRERAPKPPVTPWKLEDFVVEPQEGKTRFHDFKLAPELMHAIQDLGF
PYCTPIQAQVLGFTLAGKDAIGRAQTGTGKTAAFLISIITQLLQTPPPKERYMGEPRALI
IAPTRELVVQIAKDAADLTKYTGLNVMTFVGGMDFDKQLKQLEARHCDILVATPGRLLDF
NQRGDVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPPKTERQTLLFSATFTDDVMNL
AKQWTTDPSIVEIEAENVASENVEQHIYAVAGADKYKLLYNLVNDNGWERVMVFANRKDE
VRRIEERLVRDGVNAAQLSGDVPQHKRIKTLEGFREGKIRVLVATDVAGRGIHIDGISHV
INFTLPEVPDDYVHRIGRTGRAGAAGVSISFAGEDDSYQLPSIEALLGRKISCETPPTHL
LRPVERKRP
NT seq
1470 nt
NT seq
+upstream
nt +downstream
nt
atcaccgtgctcaaagcactcaagaagatgttcggcaaaagcgaggctgagccgctcgcg
ccagtttccagtgcccctgcccccacgtccggcagccgcaatgacggtaaacagcccggc
cggaccgcacctgccgcccagccgaaaaagccagcggtaaagccggccgaacaggcaaaa
ccgctcgaggccacgcctgcgcccgtcgcgcccaagccacgtcgcgaacgtgcgcccaaa
ccgccggtcactccgtggaaactcgaagacttcgtcgtcgagccccaggaaggcaagacg
cgcttccacgatttcaagctcgccccggaactgatgcacgccatccaggacctgggcttc
ccgtactgcacgccgatccaggcgcaagtcctgggtttcaccctggccggcaaagacgcc
atcggtcgtgcgcagaccggcaccggcaagaccgctgcgttcctgatctcgatcatcacc
cagttgctgcagacgccaccgcccaaagaacgctacatgggtgaaccgcgcgccctgatc
attgccccgacccgggagctggtcgtgcagatcgccaaggacgccgccgacctgaccaag
tacaccggcctcaacgtgatgaccttcgtgggcggcatggacttcgacaagcagctcaag
cagctcgaagcccgccactgcgacatcctggtggccactccgggccgcctgctggacttc
aaccagcgcggcgacgtgcacctggacatggtcgaagtgatggtgctggacgaagccgac
cgcatgctcgacatgggtttcatcccgcaggtccgtcagatcattcgccagaccccaccg
aaaaccgagcgtcagaccctgctgttctccgcgaccttcaccgacgacgtgatgaacctc
gccaagcaatggaccaccgacccgtccatcgtcgagatcgaagccgaaaacgttgccagc
gaaaacgtcgaacagcacatctatgccgtagccggtgccgacaagtacaaactgctctac
aacctggtcaacgacaacggctgggaacgcgtgatggtgtttgccaaccgcaaggacgaa
gttcgccgcatcgaggaacgcctggtgcgtgatggcgtcaacgccgcgcagctgtcgggc
gacgtgccgcaacacaagcgtatcaagaccctggaaggctttcgcgagggcaagatccgc
gtgctggtggccaccgacgtggcgggccgcgggattcatatcgacggaatcagccacgtg
atcaacttcaccctgccggaagtaccggacgactacgtgcaccgcattggccgtaccggc
cgtgccggcgcggcgggtgtgtcgatcagcttcgcaggggaagatgactcgtatcagctt
ccgtcgatcgaggcgctgctgggccgcaagatcagctgcgaaacaccgccgacgcacctg
ctgcgcccggttgaacgcaagcgcccataa
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