Pseudomonas palleroniana: LDL65_17545
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Entry
LDL65_17545 CDS
T09728
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
ppae
Pseudomonas palleroniana
Pathway
ppae03030
DNA replication
ppae03430
Mismatch repair
ppae03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ppae00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LDL65_17545 (dnaE)
03430 Mismatch repair
LDL65_17545 (dnaE)
03440 Homologous recombination
LDL65_17545 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ppae03032
]
LDL65_17545 (dnaE)
03400 DNA repair and recombination proteins [BR:
ppae03400
]
LDL65_17545 (dnaE)
Enzymes [BR:
ppae01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
LDL65_17545 (dnaE)
DNA replication proteins [BR:
ppae03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
LDL65_17545 (dnaE)
DNA repair and recombination proteins [BR:
ppae03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
LDL65_17545 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
DNA_pol_IIIA_C
tRNA_anti-codon
tRNA_anti_2
HROB
Motif
Other DBs
NCBI-ProteinID:
UOP08900
LinkDB
All DBs
Position
3824295..3827816
Genome browser
AA seq
1173 aa
AA seq
DB search
MPASFVHLRLHTEYSLVDGLVRIKPLVKTLVGMNMPAVAVTDQNNMCSLVKFYKNAMGAG
IKPICGADLWLSNKDPDNPLSRISLLAMNGVGYRNLTELISRGFIDGQRNGSIIIEREWV
AEASEGLIMLSAAKEGEIGIALLGGNPQEAEVLAREWMQVFPDRFYLEVQRTNRPNDEEH
LHAAVALAAKLGAPLVATNDVRFIKREDFEAHETRVCIGEGRALDDPRRSKNYSEEQYLK
SAEEMAELFSDLPEALENSVEIAKRCNIEVKLGKHFLPNFPIPDGMTIDEYFRKVSFDGL
EERLAVLLPKDTTEDYEAKRQVYVDRLNFELDIIIQMGFPGYFLIVMDFIQWAKNNGVPV
GPGRGSGAGSLVAYVQKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDGRDRVIEYV
AEKYGRNAVSQIITFGSMAAKAVIRDVARVQGKSYGLADRLSKMIPFEVGMTLEKAYEQE
EILRDFIKVDEEAAEIWDMARKLEGVVRNVGKHAGGVVIAPTKLTDFSPIYCDEEGDGLV
TQFDKDDVEAAGLVKFDFLGLRTLTIIDWALKTINRDRAKAGEEPLDIAFIPLDDKPTYS
LLQKAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQSGMVDDFINRKHGR
AELAYPHSDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGYTLGGADMLRRAMGKKKPE
EMAKQRGGFIEGCATNNIDADLAGNIFDLVEKFAGYGFNKSHSAAYGLVSYQTAWLKAHY
PAPFMAAVLSADMHNTDKVVTLIEEVRTMKLRLDAPDVNASEFKFTVNDEGRIIYGLGAI
KGVGEGPVEAITEARQDGPFKDLFDFCARVDLKRINKRTLDGLIRSGALDRLGPYFHDEP
KAYQANIDRNRAVLLAAMEEAIKAAEQTARTHDSGHADLFGGLFVEDDADVYANHRKAKE
LTLKERLKGEKDTLGLYLTGHPIDEYEGEIRRFARQRIIDLKPARDTQTVAGMIIALRVM
KNKKGDKMGFITLDDRSGRIEASLFADAFHSAQSLLQTDAMVVVEGEVSNDDFSGGLRLR
IKRVMSMEDARTNLAESLRLKVKTEALKGDQLRWLGDLLKRHRGACPVTMEYTGNDAKAM
LQFGETWRIDPADGLIQALRDQFGRDNVFLQYR
NT seq
3522 nt
NT seq
+upstream
nt +downstream
nt
atgccggcttcattcgttcacctacgcctgcacactgaatactccctggtcgatggcctg
gtacggatcaaaccgctggtcaaaaccctggtgggcatgaacatgcctgcggtggcggtg
accgaccagaacaacatgtgctccctggtcaagttctacaagaacgccatgggcgccggc
atcaagccgatttgcggcgccgacctgtggctgtccaacaaagacccggataaccccctg
agccgcatcagcctgctggcgatgaacggcgtgggttatcgcaacctcaccgaactgatt
tcccgtggttttatcgacggccagcgcaatggctcgatcatcatcgagcgcgagtgggtg
gccgaggccagcgaagggctgatcatgctgtcggccgccaaggaaggcgagatcggtatt
gcgctgctcggtggcaacccccaggaagccgaagtactggctcgagagtggatgcaggtc
ttccccgaccgtttttacctggaagtccagcgtaccaatcggcctaacgatgaagaacac
ctgcacgccgcagtggcgctggccgccaagttgggcgcaccgctggtggcgaccaacgat
gtgcgtttcatcaagcgagaagatttcgaggcccacgaaacccgtgtgtgcatcggtgaa
ggccgggcgctggatgacccgcgccgctcgaaaaactacagcgaagagcaatacctcaaa
agtgccgaggagatggccgagctgttcagcgacctgcccgaggccctggaaaactccgtc
gagatcgccaagcgctgcaacattgaagtgaaactgggcaagcacttcctgcccaacttc
ccgattcccgatggcatgaccatcgatgagtacttccgcaaggtgtcgttcgatggcctg
gaagagcggttggccgttctgctgcccaaggacactaccgaagattacgaggccaagcgc
caggtctacgtggatcggctgaatttcgagctggatatcattatccagatggggttcccc
ggttacttcctgatcgtgatggactttatccagtgggccaagaacaacggcgtgccggtt
ggcccgggtcgaggctcaggtgccggctcgctggtggcttatgtacagaagatcaccgac
cttgacccgctggagtatgacctgctgttcgagcggttcctgaacccggaacgggtttcc
atgcccgacttcgacgtcgacttctgcatggatggccgtgaccgcgtgattgagtacgtg
gctgagaaatacggccgcaacgccgtcagccagatcatcactttcggttccatggcggcg
aaggcggtaatccgtgacgtggcgcgcgtacagggcaagtcttacggcctggcggaccgc
ctgtcgaagatgatcccgttcgaagtcggcatgacgctggaaaaagcctacgagcaggaa
gaaatcctgcgcgactttatcaaggttgatgaagaggccgccgaaatctgggacatggcc
cgcaagctcgaaggtgtggtgcgtaacgtgggtaaacatgccggtggcgtggttatcgca
ccgaccaaacttaccgacttttcgccgatctactgcgatgaagaaggcgacggcctggtt
acccagttcgacaaggacgacgtggaagccgccggcctggtgaagttcgacttcctgggc
ctgcggaccctgacgatcatcgattgggcgctcaagacgatcaaccgcgaccgcgccaag
gccggcgaggagccgctggatatcgcgttcatcccgctggatgacaagccgacctattcg
ttgctgcaaaaagccgaaaccacggcagtattccagcttgaatcccggggcatgaaggag
ctgatcaaaaagctcaagcccgactgcctggaagacttgatcgcactggtggccctgttc
cgtccggggccgctgcaatcgggcatggtggatgacttcatcaaccgtaagcacgggcgt
gccgagctggcatatccgcattccgattatcagtacgagggcctcaagccagtactggca
ccgacctacggcatcatcctgtatcaggaacaggtgatgcagattgcccaggtgatggcg
ggctacaccctgggtggtgcggacatgctgcgtcgcgccatgggtaagaaaaaacccgag
gaaatggccaagcagcgcggtggtttcattgaggggtgtgccaccaataatattgacgcc
gatctggccggtaacattttcgacctggtggaaaaattcgccggttatggcttcaacaaa
tcccactccgctgcctacggcctggtgtcgtaccagaccgcctggctgaaagcccactac
ccggcgcccttcatggctgcggtactctcggcggacatgcacaacaccgacaaggtcgtg
accttgatcgaggaagtgcgcaccatgaagctgcgcctcgatgcgccggacgtgaacgcc
tcggagttcaagttcacggtgaatgacgaaggccgcatcatctatggcctgggcgcgatc
aagggggtcggcgaaggcccggtggaagcgatcaccgaagcgcggcaggacgggccattc
aaggatctgttcgacttctgtgcccgggttgacctcaagcgcatcaacaaacgcaccctc
gatggcctgatccgcagtggcgcacttgaccgtctcggcccctatttccatgatgagccg
aaggcttaccaggccaatatcgaccgcaaccgggcggtactgctggccgccatggaagag
gcgatcaaggccgccgaacagactgcccgcacccacgacagtggccatgcggacctgttt
ggggggctgttcgtcgaagacgatgcggatgtgtacgcgaaccaccgcaaggccaaggaa
ttgaccctcaaggaacgtctcaagggtgagaaagacaccttgggtctgtaccttaccggt
cacccgatcgacgaatacgaaggagagatccgtcgttttgcccgtcagcgcatcatcgac
ctgaagccggcgcgcgacacccagaccgtcgccggcatgatcatcgccctgcgggtgatg
aagaacaagaagggcgacaagatgggctttatcaccctcgacgaccgctcggggcgaatc
gaggcgtcgctgtttgccgatgcgttccactcggcacaatcgttgctgcagaccgatgcc
atggtggtggtggaaggggaggtcagtaacgatgacttctccggtggcctgcgtctgcgg
atcaagcgggtcatgagtatggaagatgcccgtaccaacctggccgaaagcctgcgcttg
aaggtcaagaccgaagcgctcaagggcgatcagctacgctggttgggtgatttgctcaag
cgtcaccgtggcgcttgccctgtgaccatggaatacaccggcaacgacgccaaggcgatg
ttgcaatttggcgagacgtggcgaattgatccggcggatggcttgattcaagctttgcgt
gaccagttcgggcgagacaacgtcttcctccaataccgctga
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integrated database retrieval system
