Pseudomonas palleroniana: LDL65_19095
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Entry
LDL65_19095 CDS
T09728
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
ppae
Pseudomonas palleroniana
Brite
KEGG Orthology (KO) [BR:
ppae00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ppae03032
]
LDL65_19095 (topA)
03400 DNA repair and recombination proteins [BR:
ppae03400
]
LDL65_19095 (topA)
Enzymes [BR:
ppae01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
LDL65_19095 (topA)
DNA replication proteins [BR:
ppae03032
]
Prokaryotic type
DNA Topoisomerases
LDL65_19095 (topA)
DNA repair and recombination proteins [BR:
ppae03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
LDL65_19095 (topA)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_Ribbon_Topo
Zn_ribbon_bTOP1
Toprim
Zn_ribbon_Top1
Zn_ribbon_recom
Motif
Other DBs
NCBI-ProteinID:
UOP09195
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Position
4137837..4140458
Genome browser
AA seq
873 aa
AA seq
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MGKSLVIVESPAKAKTINKYLGNEYVVKSSIGHIRDLPTSGSASASKEPAAKRGKAAAGE
GPVLTPKEKARKQLVSRMGVDPDHGWKAKYEILPGKEKVIEELRRLAKDADTIYLATDLD
REGEAIAWHLREAIGGDDSRYKRVVFNEITKKAIQEAFSQPGELDIDRVNAQQARRFLDR
VVGYMVSPLLWAKIARGLSAGRVQSVAVKLVVEREREIRAFNPEEYWEVHADLGTAKGAS
VRFEVAREKGEAFKPLNEAQAMAALEKLKASSYSIVKREDKPTSSKPSAPFITSTLQQAA
SNRLGFGVKKTMMMAQRLYEAGYITYMRTDSTNLSVDAVAMARTYIESEFGNKYLPEKPN
VYSSKEGAQEAHEAIRPSDANTTPAKLSGMERDAERLYELIWRQFLACQMLPAQYLSTTV
TVAASDFELRAKGRILKFDGYTRVMPQIAKPGDDDVLPDMAQGDSLKLIKLDPSQHFTKP
PARYSEASLVKEMEKRGIGRPSTYAAIISTIQDRGYVALHNRRFYSEKMGDIVTERLSES
FSNLMDYGFTAGMEENLDDVAQGERDWKNVLDEFYGDFKKKLEVAESPESGMRANQPVMT
DIPCQTCGRPMQIRTASTGVFLGCSGYSLPPKERCKATVNLVPGDEIAADDEGESESLVL
RGKHRCPICSTAMDAYLLDEKHKLHICGNNPDCNGYEIEEGTYRIKGYEGPSLECDKCGS
EMQLKTGRFGKFFGCTNPTCKNTRKLLKSGDAAPPKMDPVKMPELKCEKVNDTYILRDGA
SGLFLAASQFPKNRETRAPLVLEIVPHKDEIDPKYHFLCEAPKKDPDGRPAVIRYSRKTK
EQYVQTEVDGKPTGWKAFYDGGKWKVEDKRQGA
NT seq
2622 nt
NT seq
+upstream
nt +downstream
nt
atgggcaaatcgctggtcattgtggaatccccggctaaggccaagaccatcaacaagtac
ttgggcaacgagtacgtggtgaagtcgagtatcggccatatccgagacctgcccaccagc
ggttcggctagcgccagcaaggagcctgccgccaagcgcggcaaggcggctgcgggcgaa
ggtccggtgctcacccctaaagagaaagcgcgcaagcaactggtttcgcgcatgggtgtg
gacccggatcatggctggaaggccaagtacgaaatccttccgggcaaggaaaaggtcatc
gaagagctgcgccggctcgccaaggatgccgacaccatctatctcgcaacggacttggac
cgcgaaggggaagccattgcctggcacctgcgggaagccatcggcggtgacgacagccgc
tacaagcgtgtggtgttcaacgaaatcaccaagaaagccatccaggaagccttctcccag
ccgggcgagctggacatcgaccgggtcaatgcgcagcaggcgcggcgtttccttgaccgc
gtggtgggttacatggtctcgccactgctgtgggcgaagatcgcccgtggcctgtccgct
ggtcgtgtgcaatcggtcgcggtgaaactggtcgtggagcgtgagcgcgagatccgtgcg
ttcaaccccgaagagtactgggaagtccacgccgacctgggcaccgccaaaggcgccagc
gtgcgctttgaagtggcccgcgagaaaggcgaggcgttcaagccgctgaacgaagcccag
gccatggccgcgctggaaaagctcaaggcttccagctacagcatcgtcaagcgtgaagac
aaaccgaccagcagcaagccgtcggcgccgttcatcacctccaccctgcagcaggccgcg
agcaaccgcctgggcttcggtgtgaagaaaaccatgatgatggcccagcgtctgtatgag
gccggctacatcacgtatatgcgtaccgactccaccaacctgtcggtggacgcggtggca
atggcgcgtacctatattgaaagcgagttcggcaacaagtacctgccggagaagccgaac
gtctacagcagcaaggaaggcgcccaggaggctcacgaagcgattcgtccgtccgacgcc
aataccacgcccgccaagctgagcggcatggagcgcgatgctgagcgcctctatgagctg
atctggcgccagttcctggcctgccagatgctgccggcgcaatacctgtccaccacggtc
accgtggcggcttccgacttcgagctgcgtgccaagggccgtatcctcaagttcgacggc
tacacccgtgtcatgccgcagattgccaagcctggcgacgacgatgtgctgccggacatg
gcccagggcgacagcctgaagctgatcaagctcgacccgtcccagcacttcaccaagccg
ccggcgcgttattcggaagccagcctggtaaaagagatggaaaaacggggtattggtcgt
ccttcgacctacgccgcgatcatctccaccatccaggaccgcggctatgtggcgctgcat
aaccgtcgcttctattcggaaaaaatgggcgacatcgtcaccgaacggttgtccgagagc
ttctccaacctgatggactacggcttcactgccggcatggaggagaacctcgatgacgtg
gcccagggcgagcgcgactggaaaaacgttcttgacgagttctacggcgacttcaagaaa
aaactcgaagtggccgaaagccctgagagcggcatgcgtgccaaccagccggtgatgacc
gacatcccgtgccagacctgcgggaggccgatgcagattcgtacggcctctaccggcgta
ttcctcggttgctcgggctacagtctgccgccaaaagaacgctgcaaggcgacggtcaac
ctggtgccgggcgatgaaattgccgccgatgatgagggcgagtccgagtcgctggtcctg
cgtggcaagcaccgctgcccgatctgcagcacggcgatggacgcttacctgctggatgag
aagcacaagctgcacatctgcggtaacaaccccgattgcaatggctacgagattgaagaa
ggcacctaccgcatcaagggctacgaaggcccgagcctggaatgcgataagtgcggcagt
gagatgcagctcaagactggccgtttcggcaagttctttggttgcaccaacccgacctgc
aagaacacccgcaagctgctgaagagcggcgatgcggcgccgccgaagatggacccggtg
aagatgcctgagctcaagtgcgagaaggtcaacgacacctacatcctgcgtgacggggct
tcgggcctgttcctggcggccagccagttcccgaaaaaccgcgagacccgtgcgccgctg
gtgctggagatcgtgccacacaaggatgaaatcgatcctaagtaccacttcctgtgtgaa
gcaccgaagaaagatccggacggtcgcccggccgtgatccgctacagccgcaagaccaag
gagcagtacgtgcagaccgaggtggacggcaagcctaccggctggaaagcgttctacgac
ggcggcaagtggaaggtggaggacaagcgtcagggcgcttga
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