Pseudomonas palleroniana: LDL65_19140
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Entry
LDL65_19140 CDS
T09728
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ppae
Pseudomonas palleroniana
Pathway
ppae03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ppae00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
LDL65_19140 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ppae03400
]
LDL65_19140 (mfd)
Enzymes [BR:
ppae01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LDL65_19140 (mfd)
DNA repair and recombination proteins [BR:
ppae03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
LDL65_19140 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
UB2H
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
UOP09203
LinkDB
All DBs
Position
complement(4148370..4151819)
Genome browser
AA seq
1149 aa
AA seq
DB search
MPVLRLPLLPAAAGKQHWGNLPGAALSLAIAEAASAAKRFTLLLTADSQSAERLEQELSF
FAPDLPVLHFPDWETLPYDLFSPHQDIISQRIASLYRLPELAHGVLVVPITTALHRLAPT
KFLLGSSLVLDVGQKLDVDQMRTRLEASGYRCVDTVYEHGEFAVRGALIDLFPMGSKLPY
RIDLFDDEIETLRTFDPENQRSIDKVDSVKLLPAREFPLQKDAVTRFKARFRERFDVDFR
RCPIFQDLSSGITPAGIEYYLPLFFDETSTLFDYLPQDTQVFSLPGIEQAAENFWNDVRN
RYEERRVDPSRPLLPPAELFLPVEDCFARLKSWPRVVASQQDVEAGSGRERFPAQTLPDL
AIEAKANQPLEALSNFLGDFPGRVLFTAESAGRREVLLELLERLKLRPKTVDNWPDFVAG
KDRLAITIAPLDEGLLLNDPALALIAESPLFGQRVMQRRRREKRADANNDAVIKNLTELR
EGAPVVHIDHGVGRYLGLQTLEIDNQAAEFLTMEYAEGAKLYVPVANLHLIARYTGSDDA
LAPLHRLGSETWQKAKRKAAEQVRDVAAELLDIYARRAAREGYAFADPKADYATFSAGFA
FEETPDQQTTIEAVRADMLAPKPMDRLVCGDVGFGKTEVAMRAAFIAVHAGKQVAILVPT
TLLAQQHYNSFRDRFADWPVTVEVMSRFKSAKEVSAAVADLAEGKIDIVIGTHKLLSDDV
KIKNLGLVIIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVSGMRDLSIIAT
PPARRLSVRTFVMEQNKSTVKEALLRELLRGGQVYYLHNDVKTIEKCAADLAELVPEARI
AIGHGQMRERELEQVMSDFYHKRFNVLIASTIIETGIDVPSANTIIIERADKFGLAQLHQ
LRGRVGRSHHQAYAYLLTPPRQQITGDAEKRLEAIANTQDLGAGFVLATNDLEIRGAGEL
LGDGQSGQIQAVGFTLYMEMLERAVKAIRKGEQPNLDQPLGGGPEINLRLPALIPEDYLP
DVHARLILYKRIASATDEEGLKDLQVEMIDRFGLLPEPTKNLVRLTLLKLQAEQLGIKKV
DAGPQGGRIEFAAQTPVDPLVLIKLIQGQPNRYKFEGATLFKFMVPMERAEERFNTLEAL
FERLIPKSA
NT seq
3450 nt
NT seq
+upstream
nt +downstream
nt
gtgcccgttctgcgtctaccgcttctccctgccgcggcaggtaaacagcactggggcaac
ctgcccggtgccgccctgagcctggccattgccgaggctgccagcgcagccaagcgcttt
accctgctgctcaccgccgacagccaaagtgccgaacggctggagcaggagctgagcttc
ttcgcccccgatttgccggtgctgcatttccccgactgggaaaccctgccctacgacctg
ttctcgccgcaccaggacatcatctcccagcgcatcgccagcctgtatcgcttgccggag
ctggcccacggtgtactggtggtgccgatcaccacggcgctgcaccgcctggcgccgacc
aagttcctgctcggtagcagcctggtgctggatgtcggccagaaactcgacgtggaccag
atgcgcacgcgcctggaagccagcggctaccgctgcgtcgacacggtgtacgaacacggc
gagttcgccgtgcgcggggcattgatcgacctgttccccatgggcagcaaactgccgtat
cgcatcgacctgttcgatgacgaaatcgagaccctgcgcaccttcgacccggaaaaccaa
cgctccatcgacaaggtcgattcggtcaagctgctgccagcacgggaattccccctgcaa
aaggatgcggtgacccgcttcaaggcgcgctttcgcgagcgcttcgacgtggacttccgc
cgctgcccgatctttcaggacttgagcagcgggattacaccggccggtatcgagtactac
ctgccactgttcttcgacgaaacctccaccctgttcgattacctgccccaggacacccag
gtgttctcgctaccgggtatcgaacaagcggcggaaaatttctggaacgatgtgcgtaac
cgctatgaagagcgtcgcgtcgatccgtcccgtcctttattgccgcccgccgaattgttc
ctgccggtggaagactgcttcgcgcgcctgaaaagctggccgcgcgtggttgccagccag
caagacgtggaagccggcagcggccgcgagcgcttccccgcgcaaacgctgccggacctg
gcgattgaagccaaggccaatcagccgttggaagcgctgtcgaatttcctcggcgatttc
cccggccgcgtgttgtttaccgccgaatccgccggtcgccgcgaagtgctgctggagctg
ctggaacgcttgaagctgcgcccgaaaaccgtcgacaactggccggacttcgttgcgggc
aaagatcgcctggcgatcaccatcgcgccgttggacgagggcctgttgttgaatgatccg
gccctggcactgatcgccgagagcccgctgttcggccaacgcgtgatgcagcgccgccgc
cgagaaaaacgtgccgatgccaacaacgatgccgtcatcaagaacctcaccgagctgcgc
gaaggcgcaccggtggtgcatatcgaccatggcgtaggtcgctatctgggcctgcagacc
ctggagattgataaccaggccgccgaattcctcaccatggaatacgccgagggcgccaag
ctctacgtgcccgtggccaacctgcacctgatcgcccgctacaccggcagcgacgacgcc
ctggcgccgctgcatcgcctgggttccgagacctggcagaaagccaagcgcaaagccgcc
gaacaggtgcgcgatgtggccgccgagttgctcgacatctacgcccgccgcgccgcccgc
gaaggttatgcgttcgccgacccgaaagccgactacgccaccttcagcgccggcttcgcc
ttcgaagaaaccccggaccagcaaaccaccattgaagccgtgcgcgccgacatgctcgcg
cccaaaccgatggaccgcctggtgtgcggcgacgtgggcttcggcaagaccgaagtggcc
atgcgcgcagcgttcattgccgtacacgcgggcaagcaagtggcgattctggtgccgacc
accctgctcgcccaacagcactacaacagctttcgcgaccgctttgccgactggccggtg
accgtggaagtgatgagccgcttcaagtcggccaaggaagtgagtgccgccgtcgccgat
ctcgccgaaggcaagatcgacatcgtgatcggcacccacaagctgctgtcggacgatgtg
aagatcaagaacctgggcctggtgatcatcgacgaagaacaccgctttggggtgcgccag
aaggaacagctcaaggccctgcgcagcgaagtcgacatcctgacccttaccgccacgccg
attccgcgcacgctgaacatggcggtgtcgggcatgcgcgacctgtcgatcatcgccacg
ccgccggcgcgccgcttgtcggtacgcaccttcgtcatggagcagaacaaaagcacggtc
aaggaagcgctgctgcgcgaattgctgcgcggcgggcaggtttattacctgcacaacgat
gtgaaaaccatcgagaaatgcgctgccgacctcgccgaactggtgccggaagcccgtatt
gccatcggccacggccagatgcgcgaacgtgaactcgaacaggtgatgagcgacttctat
cacaagcgcttcaacgtgctgatcgcctcgaccattatcgagaccggcatcgacgtgccg
agcgccaacaccatcatcatcgagcgcgccgacaagttcggcctggcccaattgcaccag
ttgcgtggccgcgtagggcgcagccaccaccaggcctacgcctacctgctgacaccccca
cgccagcagattaccggggatgccgaaaagcgcctggaagcgatcgccaacacccaggac
ctgggggccggttttgtactggccaccaacgacctggaaatccgcggtgccggcgaattg
ctgggcgacggccagagcggacagatccaggcggtgggcttcaccctgtatatggaaatg
ctggaacgcgcggtgaaggccattcgcaagggcgagcaaccgaacctcgaccaacccttg
ggtggcggtccggaaatcaacctgcgcttgccggcgctgatccccgaggattatctgccg
gatgtgcatgcacgattgatcctgtacaagcgcattgcctcggccaccgatgaagaaggt
ctcaaggacctgcaggtggaaatgatcgaccgcttcggcctgttgcctgaaccgaccaag
aacctggtgcgcctgaccttgctcaaattgcaggccgagcagttggggatcaagaaggtc
gacgccgggcctcaaggtgggcgcatcgaatttgcagcgcaaacgccggttgaccccttg
gtgctgatcaagctgatccaggggcagcccaaccgttacaagttcgaaggggctacgctg
ttcaaattcatggtcccgatggaacgcgccgaagaacgctttaataccctggaggcgctg
tttgagcgcctcatcccgaaatccgcttga
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integrated database retrieval system
