Pseudomonas palleroniana: LDL65_19825
Help
Entry
LDL65_19825 CDS
T09728
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
ppae
Pseudomonas palleroniana
Pathway
ppae03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppae00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LDL65_19825
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppae03019
]
LDL65_19825
03009 Ribosome biogenesis [BR:
ppae03009
]
LDL65_19825
Enzymes [BR:
ppae01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LDL65_19825
Messenger RNA biogenesis [BR:
ppae03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LDL65_19825
Ribosome biogenesis [BR:
ppae03009
]
Prokaryotic type
rRNA helicases
LDL65_19825
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
BscB_a-b
Motif
Other DBs
NCBI-ProteinID:
UOP09335
LinkDB
All DBs
Position
4289715..4291388
Genome browser
AA seq
557 aa
AA seq
DB search
MTQETGGFAAFNLNPNILAAVAATGYEEPSAIQQQSIPIIMAGKDMIGQAQTGTGKTAAF
ALPILQCIDPAKREPQALILAPTRELALQVATAFETYAKQMPGVTVVAVYGGAPMGPQLK
AIRNGAQIVVATPGRLCDHLRRDEKVLSTVNHLVLDEADEMLKLGFMDDLEVIFKALPPT
RQTVLFSATLPQSIRAIAERHLRDPEHVKIQTKTQTVTAIEQAHLLVHADQKTSAVLSLL
EVEDFDALIMFVRTKQATLDLASALEAKGYKAAALNGDIAQNQRERVIDSLKDGRLDIVV
ATDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQVI
ERVTGQKVAEVRLPDAQAVLDARIKKLTNSLSPLVADAESTHGDLLDRLTADIGCTPRAL
AAALLRKATNGQALTLAAIEKERPLVPNSAPRGDRPERSGDRPDRGDRERRAPVPLAEGR
ARCRTALGARDGIAAKNLLGAILNEGGLAREAIGRIQVRDSFSLVELPEDGLEKLLAKLK
DTRVAGKQLKLRRYRED
NT seq
1674 nt
NT seq
+upstream
nt +downstream
nt
atgacccaggaaaccggcggcttcgccgcttttaatcttaacccgaatattcttgcagcc
gtcgcagcgaccggctacgaagagccttcggcgattcagcagcaatcgatcccgatcatc
atggccggcaaagacatgattggccaggcgcaaaccggtaccggtaaaaccgctgccttc
gccctgcctatcctgcaatgcatcgatcctgccaagcgcgaaccgcaagccctgatcctg
gcgccaacccgtgagttggcgctgcaagtagcaaccgcctttgaaacttacgccaagcaa
atgccgggcgtaaccgttgtggccgtttacggcggcgcgcccatgggcccacaactcaag
gcaatccgtaatggcgcacagatcgttgtcgccactccgggccgtctgtgcgaccacctg
cgtcgtgacgaaaaagtcctgtcgaccgtgaaccacctggttctcgacgaagctgacgaa
atgctgaagctgggcttcatggatgacctggaagtcatcttcaaggctctgccaccgact
cgtcagaccgtactgttctcggccaccctgccacagtcgatccgtgccattgccgaacgc
cacctgcgcgatcctgagcacgtcaagatccagaccaagactcagaccgttaccgcgatc
gaacaggctcacctgttggttcacgctgaccagaagacctcggctgtattgagcctgctg
gaagtcgaagacttcgatgccctgatcatgttcgtgcgcaccaagcaagcgaccctggac
ctggccagtgccctggaagccaaaggctacaaggccgctgcgctgaacggtgacatcgcc
cagaaccaacgtgagcgcgtcatcgactccctcaaggatggtcgcctggacatcgttgtc
gccaccgacgtggcggctcgtggtctcgacgttccacgcatcactcacgtgttcaacgtt
gacatgccgtacgacccggagtcctacgttcaccgtatcggccgtaccggccgtgcgggt
cgcgaaggccgtgcactgctgctggtgactccacgtgagcgccgcatgctgcaagtcatc
gagcgcgtaaccggtcagaaagttgccgaagtccgcctgccggatgcccaggcagttctg
gatgctcgcatcaagaagctgaccaacagcctgtcgccgctggtggctgacgctgaatcg
acccatggcgacctgctggaccgcctgaccgccgatatcggttgcaccccgcgcgccctg
gctgcagccctgctgcgtaaagccaccaacggtcaggccctgaccctggcggccatcgag
aaagaacgcccactggtgccgaacagcgccccacgcggtgatcgtccagagcgttccggt
gaccgtccagaccgtggtgatcgtgagcgtcgtgctccggtgccattggctgaaggccgt
gctcgttgccgtaccgcgctgggtgcgcgtgacggtatcgctgccaagaacctgctgggc
gctatcctcaacgagggtggcctggcacgtgaagccatcggtcgtatccaggtgcgtgac
agcttctccctggtggagctgccggaagacggcctggaaaaactgctggccaagctgaaa
gacacacgcgttgccggcaagcagctcaaactgcgtcgctaccgcgaagattga
DBGET
integrated database retrieval system
