Pseudomonas palleroniana: LDL65_25650
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Entry
LDL65_25650 CDS
T09728
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
ppae
Pseudomonas palleroniana
Pathway
ppae03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
ppae00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
LDL65_25650 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ppae03400
]
LDL65_25650 (ligD)
Enzymes [BR:
ppae01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
LDL65_25650 (ligD)
DNA repair and recombination proteins [BR:
ppae03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
LDL65_25650 (ligD)
BRITE hierarchy
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_C
Exo_endo_phos
DNA_ligase_A_M
DNA_primase_S
Tudor_3
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
UOP10426
LinkDB
All DBs
Position
5693928..5696741
Genome browser
AA seq
937 aa
AA seq
DB search
MRNLKIATFNVNGIGTRLPNLLQWLEKERPDIVCLQELKAQDKAFPASDLEAVGYGSLHH
GQAAWNGVAILARDSEPLLIHKGLPGAQDDSQSRYLEAAVHGVVVGCLYLPNGNPQPGPK
FDYKLKWFEHLIAHAETLQASEHPVVLAGDYNVVPTDLDIYNPRSWLKDALLQPESRECF
QRLLSQGWIDSLRHLYPQERVYTFWDYFRQHWQKNSGLRIDHLLLNPVLAPHLKNAGVDA
WVRGEEHPSDHAPTWIEISAGVQKRRTVAQKKRAAKPAASKPAEKPSTSPAKPGQPELAN
ARPGALPESLKPELATLVDSAPEGDWRYEVKFDGYRIMARVDKGKVRLFTRNGHDWTHKL
PRQAEAIAGLALKSAWLDGEIVVANAQGVPDFQALQNAFELGRDGNIVYYLFDMPFLDGM
DLREVPVEQRREALSGILARNEDEALRYSQDFAETPQALLDSACEMQMEGLIGKRVGSAY
VSRRSGDWIKLKCKRRQEFVVVGYTEPKGSRSKFGALLLGLHDIDSGELKYAGKVGTGFN
QTTLNTIYAQLTPLEVKQPAVVNPPKGFEAKDVHWLKPVLLAEVTFAEITQEGSVRQAVF
QGLRNDKPAQSIIEERPAHAAEVEKKPTRKQATAAKAKGKAGDDASTTIRLTHPQRVIDP
SSGATKRDLADYCIAVSDWLLPQLLNRPVALVRAPDGIGAELFFQKNPQRLAIPGIEIIG
KAETGHPVMLINNLEALIGAVQMSTIELHTWNAVSKDLHRPDRFILDLDPDPALPWKSMV
EATQLTLTVLDELGLKSFLKTSGGKGIHIVVPLTPKADWDTVKSFSHAIVKHIANLLPDR
FSAVSGPKNRVGRIFIDYLRNGLGATTISAYSPRSREGLPVSVPIFREELKEIKGANAWN
IHNLPQRLEALKVDPWADMPGTRQTITAQMRKRIGLR
NT seq
2814 nt
NT seq
+upstream
nt +downstream
nt
atgcgcaacctcaagatcgccacgttcaacgtcaacggcatagggacgcgactgcccaac
ctcctgcagtggcttgaaaaagaacgccccgacatcgtgtgcctgcaggaactgaaggcc
caggacaaggctttcccggcaagcgatctggaggcggtgggctatggctcattgcatcat
ggtcaagctgcgtggaacggcgtggccattctggcgcgcgactccgagcccctgttgatt
cataaaggcttgcccggcgcgcaggacgactcgcagtctcgctaccttgaagcggctgta
catggggttgtcgtcgggtgcctgtacctgcccaacggaaacccgcagccaggccccaaa
ttcgattacaagctcaagtggttcgagcatctgattgcgcatgccgaaacgctgcaagcc
agcgaacacccggtggtgctggcgggcgactacaacgtcgtccccaccgacctggatatc
tacaacccccgctcctggctcaaggatgcgctccttcaaccagaaagccgcgaatgcttt
caaaggctgctgagccagggttggatcgactcgctgagacacttgtacccgcaagagcgt
gtgtacacgttctgggattatttccgccagcattggcagaagaactccggtttgcgcatc
gaccacctgctgctgaacccggtactcgctcctcacctcaagaacgccggcgtagacgcc
tgggtccggggcgaagagcaccccagcgaccatgcgccgacctggatcgagatctcagcc
ggcgttcagaagcggcgcaccgtcgcgcaaaagaagcgcgcagctaaaccggcagcatcc
aaacccgccgagaaaccgtccacgtcaccggccaaaccgggacaaccagagttggccaat
gcgcggcccggcgctcttccggaaagtctgaaaccggaactggccacgctggtggattca
gcccctgagggggattggcgctatgaagtcaaattcgacggttaccgcatcatggctcgg
gtggacaagggtaaggtgcggttgtttacccgcaacggccatgactggacgcacaagctg
cctcgccaggccgaagccattgccggcctggccttgaagtccgcgtggctggatggcgaa
atcgtggttgccaacgcgcaaggcgttcccgatttccaggccctgcaaaatgcctttgaa
ctgggccgcgacggcaatattgtctactacctcttcgacatgccctttctcgacggcatg
gacttgcgcgaggtgcccgtcgaacagcgccgggaggccttgtccgggatactggcgcgc
aatgaagatgaggctctcaggtattcgcaagacttcgccgaaacaccgcaggcgttgctc
gacagcgcatgcgagatgcaaatggagggtcttatcggcaaacgtgttggcagtgcctac
gtatcacgccgcagcggcgactggatcaagctcaaatgcaaacgccggcaggaatttgtg
gttgtcggctacaccgagccgaaaggctcgcgcagtaaattcggagcgctactgctgggg
ctgcacgacatcgatagcggtgagctcaaatacgcaggaaaggttggcaccggcttcaac
cagaccacactgaatacgatctacgcacaattaacccccctcgaagtcaagcagccggca
gtcgtcaaccctcccaagggctttgaagccaaggacgtgcactggctgaagcctgtgcta
ctggccgaggtcacctttgccgagatcacccaggaaggttccgtacgccaagccgtattc
cagggcctgcgcaacgataaacccgcgcagtcgatcatcgaagagcgcccggcccatgcc
gctgaagtagagaaaaagccgacccgaaaacaggcgacggcggcgaaagccaaaggtaaa
gccggcgacgatgcatcaaccaccattcggctcacccatccgcaacgagtgattgacccc
agcagcggcgcaaccaaacgtgacctggcggactactgcatcgccgtctctgactggctt
ctaccgcagttactcaatcgccccgtcgcgctggtgcgcgcgccggacggcatcggcgca
gagttgtttttccagaaaaacccgcagcgtctggcaatccccggcatcgaaatcatcggc
aaggcagagaccggccaccctgtcatgttgatcaacaacctggaagcgctgatcggcgcc
gtgcagatgagcacgattgaactgcatacctggaacgccgtttccaaagatctgcaccgc
cctgaccggtttattctcgaccttgaccccgatccggcgctgccatggaaaagcatggtc
gaggccacccagctgacattgacggtactggacgagctggggctcaagtcgttcctgaaa
accagcggcggcaagggcatccacattgtcgtgccgttgacgccgaaagccgactgggac
acggtcaaaagctttagccatgcgattgtcaaacatatcgccaacctgcttcccgatcgg
ttctcggcagtttccgggccgaagaaccgggtgggacggattttcatcgactacctgcgc
aatggcctgggtgcgaccacgataagcgcctattcaccgcgtagccgcgagggcttgccg
gtgtcggtgccgattttcagagaggaactcaaagagatcaaaggcgccaacgcgtggaac
atccacaacctccctcaacgcctggaggcactcaaggttgatccgtgggcggatatgccg
ggaacccgacagaccatcacagcccagatgcgtaaacgcatcgggctcaggtag
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