Pseudomonas palleroniana: LDL65_26035
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Entry
LDL65_26035 CDS
T09728
Name
(GenBank) DNA topoisomerase IB
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
ppae
Pseudomonas palleroniana
Brite
KEGG Orthology (KO) [BR:
ppae00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ppae03032
]
LDL65_26035
03400 DNA repair and recombination proteins [BR:
ppae03400
]
LDL65_26035
Enzymes [BR:
ppae01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
LDL65_26035
DNA replication proteins [BR:
ppae03032
]
Prokaryotic type
DNA Topoisomerases
LDL65_26035
DNA repair and recombination proteins [BR:
ppae03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
LDL65_26035
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_I
Top1B_N_bact
Motif
Other DBs
NCBI-ProteinID:
UOP10498
LinkDB
All DBs
Position
5780369..5781418
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AA seq
349 aa
AA seq
DB search
MPDSALPADLPRDLHYVDDSQPGIRRKTLRGKFQYFDVQGKRITDADEIKRLNALAVPPA
YTDVWICADPRGHLQATGRDARGRKQYRYHPRWREVRDSDKYARLQEFGKALPKLRKQLE
AQIAEPGFTREKVLATVVMLLDATLIRVGNTQYARDNKSYGLTTLRNRHVDIKGSEIQFQ
FRGKSGVEHQVSVRDKRLATVVKRCMELPGQNLFQYLDADGERHTVSSHDVNAYLNSLTG
ADFTAKDYRTWAGTALALAVLRDLEWQPESDAKRHVVAMVKSVAKQLGNTPAVCRKCYIH
PAVLEHFSLGELSKLPKPRVRQGLKAEEVALAMFLEQLAADLPKNAKAG
NT seq
1050 nt
NT seq
+upstream
nt +downstream
nt
atgcccgactctgcgctgcccgccgatctaccccgcgacctgcattacgttgacgacagc
cagcccggcatccgccgtaaaacgctgcggggcaagttccagtatttcgatgtgcagggc
aagcgcatcaccgatgccgatgaaatcaagcgcctgaacgccctcgccgtaccgcccgcc
tataccgatgtgtggatctgcgccgatccgcgtggtcacttgcaggcaaccgggcgggat
gcccgtggccgcaagcaataccggtatcacccccgctggcgcgaagtgcgcgacagtgac
aaatacgctcggctgcaagagttcggcaaggctctgcccaagctgcgcaaacagttggag
gcacagatcgccgaacccggcttcacccgcgaaaaagtcctggccaccgtggtcatgctg
ctggacgccacgctgatccgcgtgggcaatacgcagtatgcgcgggacaacaagtcctac
gggctgactaccctgcgtaaccgtcatgtggacatcaagggcagcgaaatccagttccag
ttccggggcaaaagcggtgtcgagcatcaagtcagtgtcagggacaagcgcctggccaca
gtggtcaagcgttgcatggagctgccggggcaaaacctgtttcagtatctggatgcagac
ggtgagcgccataccgtcagttcccacgacgtcaacgcctacctgaacagcctcaccggc
gccgactttaccgccaaggactatcgcacctgggccggcaccgcccttgcgttggcggtg
ctgcgtgacctggaatggcagccggaatccgacgccaagcggcatgtggtggccatggtc
aagagtgtggccaagcagttgggcaacacgccggcggtgtgccgcaagtgctacatccac
ccggcggtactggagcatttcagcctgggcgaactgtccaaactgcccaagccacgggtg
cgccagggcctgaaagcggaagaggtcgccctggcgatgtttctagagcaattggccgcc
gacttgcctaagaacgccaaggcaggttag
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