Pseudomonas palleroniana: LDL65_27020
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Entry
LDL65_27020 CDS
T09728
Symbol
tssC
Name
(GenBank) type VI secretion system contractile sheath large subunit
KO
K11900
type VI secretion system protein ImpC
Organism
ppae
Pseudomonas palleroniana
Pathway
ppae02025
Biofilm formation - Pseudomonas aeruginosa
Brite
KEGG Orthology (KO) [BR:
ppae00001
]
09140 Cellular Processes
09145 Cellular community - prokaryotes
02025 Biofilm formation - Pseudomonas aeruginosa
LDL65_27020 (tssC)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02044 Secretion system [BR:
ppae02044
]
LDL65_27020 (tssC)
Secretion system [BR:
ppae02044
]
Type VI secretion system
Imp/Vas secretion system core components
LDL65_27020 (tssC)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VipB
VipB_2
VMAP-M0
Motif
Other DBs
NCBI-ProteinID:
UOP10680
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All DBs
Position
complement(6010993..6012471)
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AA seq
492 aa
AA seq
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MTTTPSNSQPLQGSAEGSILDNIIAQTLLSADDEAYGIAKRGVSAFIEELVKPHNRAEPV
KKHLVDRMIAEIDIKLSQQMDEILHHPDFQALEASWRGLQLLVERTDFRENIKIELLNVS
RTDLLDDFEDASEITQSGLYKHIYSAEYGQFGGQPVGAIISNYYLSPSAPDVKLMQYVAS
VACMAHAPFIAAAGPSFFGLESFTGLPDLKDLRDHFEGPQFAKWQSFRQSEDARYIALTV
PRFLLRTPYDPLECPVRTFAYQENVVNSHEHYLWGNTAYAFATRLTDSFARFRWCPNIIG
PQSGGAVEDLPLHHFQSMGEIETKIPTEVLVSDRREYELAQEGFIALTMRKGSDNAAFFS
ASSVQKAKTFGISEEGKAAELNYRLGTQLPYMMVVNRLAHYLKVLQREQLGSWKERTDLE
LELNKWIRQYVADQENPSAEVRGRRPLRAARIVVSDVEGEPGWYRVNLSVRPHFKYMGAD
FTLSLVGKLDKE
NT seq
1479 nt
NT seq
+upstream
nt +downstream
nt
atgacgaccaccccaagcaactcgcagcccctgcaaggctccgccgagggcagcatcctc
gataacattattgcccagacattattgagcgccgacgacgaggcttacggcatcgccaag
cgcggcgtgtcggcgtttatcgaagagctggtcaagccgcacaaccgtgcagaaccggtc
aagaaacacctggtcgaccggatgattgccgagatcgatatcaagctcagtcaacaaatg
gatgagattctgcatcatccggatttccaggcgctggaggcgtcctggagagggctgcag
ttactcgtcgaacgcaccgattttcgcgagaacatcaagatcgaactgctgaatgtctcg
cgcacggacctgctggacgattttgaagacgcctcggaaattacccagtcggggctgtac
aagcatatctacagcgccgagtacggccagttcggcggtcagccggtaggcgcgatcatc
tccaactattacctatcccccagcgcacccgatgtgaagctcatgcaatacgtcgccagt
gtcgcgtgcatggcccatgcccccttcatcgccgctgccggcccgagcttcttcgggctg
gaaagcttcaccggattgcccgacctgaaggacctcagggaccatttcgaaggcccgcag
tttgccaagtggcaaagttttcggcagagcgaagacgcccgttacattgccttgaccgta
ccgcgttttctgttgcgaaccccgtacgatcccctggaatgcccggtgagaacctttgcc
taccaggaaaacgtggtcaacagccacgagcattatctatggggtaataccgcctacgcg
tttgccacacgattgaccgacagcttcgcgcgttttcgctggtgcccgaacatcatcggc
ccacagagtggcggggcggtcgaagatcttcccttgcatcatttccagagcatgggtgag
atcgaaaccaaaattcctaccgaggtcctggtttcagataggcgtgaatatgaactcgcg
caagagggcttcattgccctgaccatgcgcaagggcagtgacaacgcagcgttcttttcc
gccagctcagtgcaaaaggccaagaccttcggcatcagtgaagagggcaaggccgccgag
ctgaactaccggcttggcacccagctgccttacatgatggtcgtgaaccgcctggcccat
tacctcaaggtgctgcaacgcgagcaattgggctcgtggaaggagcgcacggacctggag
ttggagctcaacaagtggattcgccaatacgtggccgaccaggaaaaccccagtgccgag
gtgcgtgggcgtaggccattgcgtgcagcgcgcattgtcgtcagcgatgtcgagggcgag
ccgggctggtaccgggtcaatttgagtgtgcgcccgcacttcaagtacatgggggcggac
ttcacattgtccctggtcggaaagctcgataaagaatga
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