Pseudomonas palleroniana: LDL65_27875
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Entry
LDL65_27875 CDS
T09728
Name
(GenBank) sigma-54-dependent Fis family transcriptional regulator
KO
K21405
sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR
Organism
ppae
Pseudomonas palleroniana
Brite
KEGG Orthology (KO) [BR:
ppae00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ppae03000
]
LDL65_27875
Transcription factors [BR:
ppae03000
]
Prokaryotic type
Helix-turn-helix
Other families
LDL65_27875
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_activat
Sigma54_activ_2
AAA_lid_14
HTH_8
HTH_30
AAA_5
HTH_7
HTH_23
nSTAND6
AAA_3
HTH_20
Mg_chelatase
HTH_22
AAA_2
PAS
nSTAND3
AAA
AAA_7
HTH_10
HTH_28
AAA_16
HTH_psq
HTH_Tnp_1
HTH_11
HTH_38
DUF2089
Motif
Other DBs
NCBI-ProteinID:
UOP10843
LinkDB
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Position
6220322..6222151
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AA seq
609 aa
AA seq
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MAAPLAHDTLIQESWRRCRAFGLDHQSAPSFDLLPAEGISQLLESQHSLVQTTHQEVLPY
YENILSNSNCLIMLADNQGQVLTSWGTQRFITPTLARGFNAGASWQERATGTNAIGTALA
CAQAVHIEHDEHFLKANRFMTGSAAPIFDAQREIIAVLDVSSDSYLPPSHTLGMVKMMSQ
TVENRLILNLFRGEHFQLTFNTGLNNLDSQWAGLLIFDESGQVLSANRRADNLLGISLSR
VMIDSLFKVSLLELLNQPEGLPFSLQAAGRNRFQCVLKRPKKTPVQARVFTAPAPSEPTS
PSPSGIGLNALHFGDSRVEKAVRQAERLLEKDIPLLIHGETGVGKEVFVKALHLASSRSR
QAFIAVNCAAIPAELVESELFGYEKGAFTGASQKGSIGLIRKADKGTLFLDEIGDMPLPT
QARLLRVLQERCVQPVGSSQLFPVDLRIISATNRVLREWVQAGRFREDLYYRIGGLALEL
PPLRERADKQALFQQLWQQHREPSQRAGLSAEVLRLFEQHPWPGNLRQASSVLQVALAMA
EDQPVRPEHLPDDFFVDLKGASPPPQAYPVDDLDLTQRLRAVGGNISHLARELGVSRNTL
YKRLRQNDG
NT seq
1830 nt
NT seq
+upstream
nt +downstream
nt
atggccgctcccttggctcacgacacgcttatccaggaatcctggcgccgttgccgcgcc
ttcggcctggaccaccagagtgctcccagcttcgacctgctgcccgccgagggcatcagc
caattgctggaaagccagcactctctggtgcagaccacccatcaggaagtgctgccctat
tacgaaaacatcctcagtaactccaactgcctgatcatgctggccgacaatcagggacag
gtcctgacctcgtggggcacccagcgctttatcacgccgaccctcgcgcgtgggttcaat
gccggggccagttggcaggaacgcgccaccggcaccaacgccatcggcacggcgctggcc
tgtgcccaagcggtgcatatcgagcacgacgagcatttcctcaaggccaaccgcttcatg
accggctcggccgcgccgatcttcgatgcgcagcgtgaaatcatcgcggtgctggatgta
tccagtgacagctacctgcccccctcccacaccctgggcatggtcaagatgatgagccag
accgtggagaaccggctgatcctcaacctgtttcgcggcgaacatttccaactgaccttc
aacacgggcctgaacaacctcgacagccaatgggcgggcctgctgatctttgatgagagc
ggccaggtgctgtcggccaaccgtcgcgcggataatttgctgggcatcagcctgtcgcga
gtgatgatcgacagtttgttcaaagtgtcgttgctggagttgctgaaccaaccggagggg
ttgccgttttcactccaggccgcaggacgcaaccgcttccaatgcgtattgaaacggccg
aagaaaaccccggtgcaggcgcgggtcttcacggcgccagcgccgagtgaaccgacatcg
ccaagccccagcgggattggcctcaacgccctgcacttcggcgatagccgcgtagagaag
gccgtgcgccaggccgagcgtctgttggagaaggatatcccgctgctgatccatggcgag
accggcgtgggcaaagaggtgttcgtcaaggccctgcacctggccagttcccgcagccgg
caggcctttatcgcggtgaactgtgcggcgattcctgcggaactggtggagtcggagctg
ttcggttatgaaaaaggcgccttcaccggcgccagccagaaaggcagcattggcctgatc
cgcaaggccgacaagggcacgttgttcctcgacgaaatcggcgatatgccgctgccgacg
caggcccgtttgctgcgggtgctgcaggagcgctgcgtgcagccggtgggcagcagccaa
ctgttcccggtggatttgcgcattatctcggccaccaatcgcgtgttgcgcgagtgggtg
caggccggccgctttcgtgaagatttgtactaccgcattggcggcctggccctggagttg
ccgcccctgcgcgagcgcgccgacaagcaggcactgttccagcaactgtggcagcaacac
cgggaacccagccaacgcgccggtttaagcgctgaagtgctgaggttgttcgagcaacac
ccgtggccggggaacttgcgccaggccagcagtgtgttgcaggtcgcgttggcgatggcg
gaagaccagccggtgcgccctgaacacctgccggatgacttttttgtcgacctcaaaggt
gcttcgccaccgccccaggcatacccagttgatgacctggacctgacacaacgcttgagg
gcagtaggcgggaacatttcccaccttgctcgggaactgggcgtcagccgcaataccctg
tacaagcgtctgcgccagaacgacggctga
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