Pelagovum pacificum: I8N54_00155
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Entry
I8N54_00155 CDS
T06971
Name
(GenBank) DNA topoisomerase IB
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
ppaf
Pelagovum pacificum
Brite
KEGG Orthology (KO) [BR:
ppaf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ppaf03032
]
I8N54_00155
03400 DNA repair and recombination proteins [BR:
ppaf03400
]
I8N54_00155
Enzymes [BR:
ppaf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
I8N54_00155
DNA replication proteins [BR:
ppaf03032
]
Prokaryotic type
DNA Topoisomerases
I8N54_00155
DNA repair and recombination proteins [BR:
ppaf03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
I8N54_00155
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Top1B_N_bact
Topoisom_I
Motif
Other DBs
NCBI-ProteinID:
QQA43029
LinkDB
All DBs
Position
complement(29507..30490)
Genome browser
AA seq
327 aa
AA seq
DB search
MTPRPALIYYPDDRPGIRRHRKGRGFTYIAPDGTRIDQEAERNRIKALAVPPAYERVWIS
PRANGHLQATGLDARSRKQYRYHPDWRAWREATKFESLAAFGEALPAIRRRVRTDLAGEV
GDRDYAIAAVIAMIDRLSLRIGAPDSARENKTYGATTLKNRHIELDDGTLHLKYRAKGGQ
LVDRRLRDARLMKVLGKLHDLPGATLASWVGPDGTAHEVSSEAVNARLAEITGTEGFTAK
TFRTWAGSEAALIVALKEGPLTIRAMSEAAAERLHNTPTIARNSYIHPEVIALAEAEDKE
RLRLSRKLPERAELRQAERALLCLLSV
NT seq
984 nt
NT seq
+upstream
nt +downstream
nt
atgacaccgcgtcccgccctcatctactaccctgatgatcgtcccggcattcgtcgccat
cgtaaaggccggggcttcacctacatcgcgccggacggcacccgcatcgatcaggaggcg
gagcgcaaccggatcaaggcgcttgccgtgccgccggcgtacgagcgtgtctggatttcg
ccgcgcgccaatgggcacctgcaagccaccggcctcgacgcgcggtcgcgcaagcaatac
cgctatcatcccgactggcgggcatggcgggaggcgacgaagttcgaaagcctcgcggcg
ttcggagaggcgctgcctgcgatccggcgacgcgttcgcaccgacctcgctggcgaagtg
ggggaccgggactacgcgatcgccgccgtcatcgcgatgatcgaccggctgtcgctccgg
atcggcgcgcccgactcggcgcgggagaacaagacctacggtgcgaccacgctgaagaac
cgtcatatcgagctcgacgatggcaccttgcacctgaagtaccgtgcgaagggcgggcag
cttgtcgatcgccgtcttcgcgacgcgcggctgatgaaagtgctcggcaaactgcacgat
ctgcccggcgccacgctggcgagctgggtcggccctgacggtacggcgcacgaagtgagt
tccgaggccgtcaacgcgcggctggcggagatcaccgggacggagggcttcaccgccaag
accttccggacatgggccggttcggaagcggccctgatcgtcgcgctcaaggaaggtcca
ctgacgatccgggccatgtcggaggcggcggccgagcggctgcacaacacgccgaccatc
gcccgcaacagctacatccaccccgaggtgatcgcgctggccgaggccgaggacaaggag
cggctgcgcctgtcccgaaaactgcccgagcgggcagagctaaggcaggcagagcgcgcg
ttgctttgcctgctgtcggtgtga
DBGET
integrated database retrieval system
