Pelagovum pacificum: I8N54_00605
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Entry
I8N54_00605 CDS
T06971
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
ppaf
Pelagovum pacificum
Pathway
ppaf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppaf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
I8N54_00605 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppaf03019
]
I8N54_00605 (pnp)
03016 Transfer RNA biogenesis [BR:
ppaf03016
]
I8N54_00605 (pnp)
Enzymes [BR:
ppaf01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
I8N54_00605 (pnp)
Messenger RNA biogenesis [BR:
ppaf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
I8N54_00605 (pnp)
Transfer RNA biogenesis [BR:
ppaf03016
]
Prokaryotic type
tRNA degradation factors
I8N54_00605 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
PNPase
KH_1
S1_RRP5
KH-I_KHDC4-BBP
Motif
Other DBs
NCBI-ProteinID:
QQA43111
LinkDB
All DBs
Position
complement(118687..120819)
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AA seq
710 aa
AA seq
DB search
MFNETKKSIQWGEETLTLETGKVARQADGTVIATLGETSVMANVTFAKQQKEGQDFFPLT
VHYQEKYYAAGKVPGGFFKREARPTEKETLTARLIDRPIRPLFVPGFKNEVLVMCTVLSH
DLVNDPDIVAMIAASAALTISGAPFMGPIAGARVGFEDGEYVLNPTVDDMQGLRNNPDQR
LDLVVAGTKDAVMMVESEAYELTEAEMLGAVNFAHEQIQPVLDCIISLAEDCAKEPFDFT
PPDYSALYDAVKAAGEEKMRAAYAITDKQERVNAVSTVKQEIIAGLSEEQQADPNLGSAL
KKLESGVLRGDVVKNGRRIDGRALDEVRPIVAETQILPRTHGSALFTRGETQALVVTTLG
TGDDEQIIDALHGNFRSNFLLHYNFPPYSVGEVGRVGSPGRREIGHGKLAWRALQAVLPA
ATDFPYTIRLVSEITESNGSSSMASVCGGSLSMMDAGVPLKSPVAGVAMGLVLEEDGSYG
ILTDILGDEDHLGDMDFKVAGTENGITSLQMDIKVAGITPEIMEKALAQAKEGRMHILGE
MSKAISTAGEFSVHAPRIETMNIPTDKIREVIGSGGKVIREIVEVSGAKVDVNDDGVIKI
ASPNGEAIKKAYDMIYSIVAEPEEGGVYKGKVVKIVDFGAFVNFFGKRDGLVHVSQIENK
RLNHPSDALKEGQEVWVKLLGFDDRGKVRLSMKIVDQETGEEIKKEEAAE
NT seq
2133 nt
NT seq
+upstream
nt +downstream
nt
atgttcaacgaaacgaagaaatccatccagtggggcgaagaaacgctgacactggaaacg
ggcaaggttgcccgtcaggccgacggcaccgtcatcgccactctgggcgaaacctcggtc
atggcgaacgttactttcgccaagcaacagaaagaggggcaggacttcttcccccttact
gtccactaccaggaaaaatactacgccgcgggcaaggtgcccggcggcttcttcaagcgt
gaggcccggccgaccgagaaggaaacgctgaccgcccgcctgatcgaccgtccgatccgc
ccgctgttcgtccccggcttcaagaacgaagtcctcgtgatgtgcaccgtgctgagccac
gacctcgtcaacgatcccgacatcgtcgccatgatcgccgcctccgcggccctgacgatc
tccggcgcgcccttcatgggtccgatcgccggcgcgcgcgtcggcttcgaggacggtgaa
tacgtgctgaacccgaccgtcgacgacatgcaggggctgcgcaacaaccccgaccagcgt
ctcgacctcgtcgtcgccggcaccaaggacgccgtgatgatggtggagtcggaagcttac
gagctgaccgaagccgagatgctcggcgccgtgaacttcgctcacgagcagatccagccg
gttctcgattgcatcatatcgctggccgaggattgcgcgaaagagcccttcgacttcacg
cctccggattactcggcgctctacgatgccgtgaaagccgccggtgaagagaagatgcgc
gccgcatacgcgatcaccgacaagcaggaacgcgtgaacgcggtctccaccgtcaagcag
gagatcatcgcgggtctttcggaagagcagcaggccgatccgaacctcggctccgccctg
aagaagctggaatccggcgtgcttcgcggtgacgtcgtcaagaacggccgccgtatcgac
ggccgcgcgctcgacgaagtccgcccgatcgtggccgaaacgcagatattgccccggacg
cacggctccgcgctgttcacccgtggtgaaacgcaggcgctggtcgtgaccacgctcggc
accggcgacgatgagcagatcatcgacgcgctgcacggcaacttccgcagcaacttcctg
ctgcactacaacttcccgccctactcggtcggtgaagtgggccgtgtcggctcccccggt
cgtcgtgaaatcggccacggcaagctcgcatggcgcgcgcttcaggccgtcctgccggcc
gcgaccgacttcccctacaccatccgcctcgtctccgagatcaccgagtccaacggctcg
tcctcgatggcgtcggtctgcggtggttcgctgtccatgatggacgccggcgttccgctg
aagtccccggtcgccggcgtggccatgggcctcgtgctggaagaagatggctcctacggt
atcctcaccgacattctcggtgacgaggatcacctcggcgacatggacttcaaggtcgcg
ggcaccgagaacggcatcacctcgctccagatggacatcaaggtcgccggcatcacgccc
gagatcatggaaaaggccctcgcccaggcgaaggagggccggatgcacatcctcggcgag
atgtcgaaagccatctccaccgcgggtgaattctccgtccacgcgccgcgcatcgagacg
atgaacatcccgaccgacaagatccgtgaagtgatcggctcgggcggcaaggtcatccgc
gagatcgtggaagtgtccggtgccaaggtcgacgtgaacgacgacggtgtcatcaagatc
gcctcgccgaacggcgaagccatcaagaaggcctacgacatgatctattcgatcgtggcg
gagccggaagaaggcggcgtctacaagggcaaggtcgtgaagatcgtcgatttcggcgcc
ttcgtgaacttcttcggcaagcgcgacggcctcgtccacgtctcccagatcgagaacaag
cgtctgaaccacccctccgacgccctgaaagagggccaggaagtgtgggtcaagctgctc
ggcttcgatgatcgcggcaaggttcgcctgtcgatgaagatcgtcgaccaggagaccggc
gaagagatcaagaaggaagaggcggccgaataa
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