Pelagovum pacificum: I8N54_05545
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Entry
I8N54_05545 CDS
T06971
Name
(GenBank) UvrD-helicase domain-containing protein
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
ppaf
Pelagovum pacificum
Pathway
ppaf03420
Nucleotide excision repair
ppaf03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ppaf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
I8N54_05545
03430 Mismatch repair
I8N54_05545
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ppaf03400
]
I8N54_05545
Enzymes [BR:
ppaf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
I8N54_05545
DNA repair and recombination proteins [BR:
ppaf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
I8N54_05545
MMR (mismatch excision repair)
Other MMR factors
I8N54_05545
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
AAA_30
UvrD_C_2
PcrA_UvrD_tudor
AAA_11
CarD_TRCF_RID
Motif
Other DBs
NCBI-ProteinID:
QQA44040
LinkDB
All DBs
Position
1104485..1106872
Genome browser
AA seq
795 aa
AA seq
DB search
MSSFSEEDAFEGAVPLSQRAMGARAAPYLDGLNAAQREAVEALDGPVLMLAGAGTGKTKA
LTTRIVHLLAQGKARPNEILSVTFTNKAAREMKKRVGAQLGEVVEGMPWLGTFHAICVRL
LRRHAELVGLKSNFTILDTDDQLRLLKQLIVAANIDEKRWPPRMLSGIIDSWKNRAWTPE
NVPVAEASAFDQKAVPLYAEYQARLKELNAVDFGDLLLHMVTIFQTHDDILKQYQRWFRY
ILVDEYQDTNVAQYLWLRLLAGGHKNICCVGDDDQSIYGWRGAEVGNILRFEKDFPGATV
VRLEQNYRSTAHILAAASGVIAANKGRLGKTLFTDGEDGEKVRLIGHWDGEEEARWIGEE
IESMQRGTRGMEPYDLDSMAILVRASHQMRAFEDRFLTIGLPYRVIGGPRFYERMEIRDA
MAYFRLAVSQDDDLAFERIVNTPKRGLGDKAVQTIQRTARANGVSLVEGARLATDAGLIK
GKGAKELKTLVQGLDRWHGQVMAEADTHVELAEMILDESGYTLMWQNDKTPEAPGRLENL
KELVKALESFDNLQGFLEHVALIMDNEQEEQGAKVSIMTLHAAKGLEFPAIFLPGWEDGL
FPSQRSMDESGLKGLEEERRLAYVGITRAERVCTISFAANRRVYGQWQSALPSRFIDELP
EENVEVLTPPGLYGGGFGAAGMGAMGGVDVTGLNSDMADRVRDADGYNSPGWKRLQSRSQ
QRGMSQPRESRNMTIDLDAVSAFTEGDRVFHQKFGYGEIMGIEGDKLEIEFDKAGTKKVV
AKFIIAADQVDDLPF
NT seq
2388 nt
NT seq
+upstream
nt +downstream
nt
atgagcagcttttccgaagaagacgccttcgagggcgccgtgcccctgtcccaacgcgcg
atgggcgcgcgtgccgcgccctatctcgacgggctgaatgccgcgcagcgcgaagcggtc
gaggcgctcgatggccccgtcctgatgctggccggggcagggacgggcaagaccaaggcg
ctgaccacgcggatcgtgcaccttttggcgcagggcaaggctcgtccgaacgagatcctg
tcggtgaccttcaccaacaaggccgcgcgcgagatgaagaaacgcgtcggcgcacagctt
ggcgaagtggtcgaagggatgccgtggctcggcaccttccacgcgatctgcgtgcgcctg
ctgcgccgccatgcggagcttgtcgggctcaagtcgaacttcaccatcctcgacaccgac
gatcagctgcgcctgctcaagcaactcatcgtcgcggccaacatcgacgaaaaacgctgg
ccgccccgcatgttgtccgggatcatcgacagctggaagaaccgcgcctggacgcccgaa
aacgttcccgtggccgaggcgagcgctttcgaccagaaggccgtcccgctctacgccgaa
taccaggcccgcctgaaggagctgaacgctgtcgatttcggtgacctccttctgcacatg
gtcacgatcttccagacgcacgacgacatcctgaaacaatatcagcgctggttccgctac
atcctcgtcgacgagtatcaggacaccaacgtcgcccagtacctgtggctgcggctgctg
gccggcggccacaagaacatctgctgcgtcggcgacgacgaccagtcgatctacggctgg
cgcggcgcggaggtcggcaacatcctccggttcgaaaaggactttcccggcgcgactgtc
gtccgtctggaacagaactaccggtcgacggcgcatatcctcgccgcggcgtccggcgtc
atcgccgccaacaaggggcgcctcggcaagaccctgttcaccgacggcgaggatggcgaa
aaggtccgcctgatcggccattgggacggcgaggaagaagcccgctggattggcgaagaa
atcgaatcgatgcagcgcggcacccgggggatggagccgtacgaccttgattcgatggcc
attctcgtccgcgccagccaccagatgcgcgcgttcgaggaccggttcctcaccatcggg
ctgccctaccgcgtgatcggcggcccccgcttctacgagcggatggagattcgtgacgcg
atggcctatttccgcctcgccgtcagccaggacgacgatctagctttcgagcggatcgtg
aacacgcccaagcgcgggctcggcgacaaggcggtgcagaccatccagcgcacagcccgc
gccaacggcgtcagtctggtagagggcgcacgtctggcaacggacgcgggtctgataaag
ggcaagggtgcgaaagagctgaaaacgctcgtgcagggcctcgaccggtggcacggccag
gtcatggcagaggccgacacccacgtcgaactggccgagatgatcctcgacgaatccggc
tacacgctgatgtggcagaacgacaagacgcccgaggcgcccggccggctggagaacctc
aaggagctggtcaaggcactggaatccttcgacaacctgcagggatttctcgaacacgtc
gcgctcatcatggacaatgagcaggaagagcagggggccaaggtctccatcatgacgctg
cacgcggccaaggggctggagtttccggcgatcttcctgccggggtgggaggatggcctc
ttccccagccagcgcagcatggatgaaagcggcctgaaagggctcgaggaggaacgccgc
ctggcctatgtcggcatcacgcgggcggaacgggtctgcaccatttccttcgccgcgaac
cgccgggtctatggccagtggcaaagcgcgctgccctcccgcttcatcgacgagctgccg
gaagagaacgtggaggtgctgacgccacccggcctctacggcggtggtttcggtgccgct
ggcatgggcgcgatgggcggggtcgatgtcacggggctgaattccgacatggccgaccgg
gtaagggatgccgacggctacaattcgccgggctggaaacgtttacagtcccgcagccaa
cagcgcggcatgtcgcagccgcgcgagtcgcgcaacatgacgatcgacctcgacgcggtc
tccgcctttaccgagggcgaccgggtgtttcaccagaagttcggctacggcgagatcatg
gggatcgagggcgacaagctcgagatcgagttcgacaaggccggcaccaagaaggtcgtt
gcgaagttcatcatcgccgccgaccaggtcgacgatctgcccttctag
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